Analysis of interatomic Contacts of Structural Units in PDB entry:
5BOQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BOQ entry

There are 12 chains in PDB entry 5BOQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ASN 21
B
 PHE 1GLY 23
B
 PHE 25THR 27
C
 GLY 1CYS 20
D
 ASN 3CYS 19
E
 GLY 1ASN 21
F
 VAL 2GLY 23
F
 PHE 25PRO 28
F
 THR 30THR 30
G
 GLY 1ASN 21
H
 ASN 3GLY 23
H
 PHE 25PRO 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5BOQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 7Right-handed alpha
Helix 2
AA2
A
12 18Right-handed alpha
Helix 3
AA3
B
7 20Right-handed alpha
Helix 4
AA4
B
21 23Right-handed 310
Helix 5
AA5
C
2 7Right-handed alpha
Helix 6
AA6
C
12 19Right-handed alpha
Helix 7
AA7
D
8 19Right-handed alpha
Helix 8
AA8
E
2 7Right-handed alpha
Helix 9
AA9
E
12 18Right-handed alpha
Helix 10
AB1
F
8 20Right-handed alpha
Helix 11
AB2
F
21 23Right-handed 310
Helix 12
AB3
G
2 7Right-handed alpha
Helix 13
AB4
G
12 18Right-handed alpha
Helix 14
AB5
H
7 20Right-handed alpha
Helix 15
AB6
H
21 23Right-handed 310
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There are no sheets in PDB entry 5BOQ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il