Analysis of interatomic Contacts of Structural Units in PDB entry:
5BOV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BOV entry

There are 4 chains in PDB entry 5BOV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 38	LEU 338
B	GLU 37	LEU 338
C	ALA 41	LEU 338
D	ALA 41	LEU 338

There are 70 helices in PDB entry 5BOV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	44	Right-handed 310
Helix 2	AA2	A	77	82	Right-handed 310
Helix 3	AA3	A	83	91	Right-handed alpha
Helix 4	AA4	A	118	133	Right-handed alpha
Helix 5	AA5	A	144	157	Right-handed alpha
Helix 6	AA6	A	174	179	Right-handed alpha
Helix 7	AA7	A	183	190	Right-handed alpha
Helix 8	AA8	A	190	197	Right-handed alpha
Helix 9	AA9	A	198	208	Right-handed alpha
Helix 10	AB1	A	208	221	Right-handed alpha
Helix 11	AB2	A	227	236	Right-handed alpha
Helix 12	AB3	A	237	240	Right-handed 310
Helix 13	AB4	A	242	255	Right-handed alpha
Helix 14	AB5	A	261	263	Right-handed 310
Helix 15	AB6	A	264	273	Right-handed alpha
Helix 16	AB7	A	295	300	Right-handed alpha
Helix 17	AB8	A	301	303	Right-handed 310
Helix 18	AB9	A	319	324	Right-handed alpha
Helix 19	AC1	A	324	338	Right-handed alpha
Helix 20	AC2	B	40	44	Right-handed 310
Helix 21	AC3	B	77	82	Right-handed 310
Helix 22	AC4	B	83	91	Right-handed alpha
Helix 23	AC5	B	118	133	Right-handed alpha
Helix 24	AC6	B	144	157	Right-handed alpha
Helix 25	AC7	B	174	179	Right-handed alpha
Helix 26	AC8	B	183	190	Right-handed alpha
Helix 27	AC9	B	190	197	Right-handed alpha
Helix 28	AD1	B	198	208	Right-handed alpha
Helix 29	AD2	B	208	221	Right-handed alpha
Helix 30	AD3	B	227	238	Right-handed alpha
Helix 31	AD4	B	242	255	Right-handed alpha
Helix 32	AD5	B	261	263	Right-handed 310
Helix 33	AD6	B	264	273	Right-handed alpha
Helix 34	AD7	B	295	300	Right-handed alpha
Helix 35	AD8	B	301	303	Right-handed 310
Helix 36	AD9	B	319	324	Right-handed alpha
Helix 37	AE1	B	324	338	Right-handed alpha
Helix 38	AE2	C	77	82	Right-handed 310
Helix 39	AE3	C	83	91	Right-handed alpha
Helix 40	AE4	C	118	133	Right-handed alpha
Helix 41	AE5	C	144	157	Right-handed alpha
Helix 42	AE6	C	174	179	Right-handed alpha
Helix 43	AE7	C	183	190	Right-handed alpha
Helix 44	AE8	C	190	197	Right-handed alpha
Helix 45	AE9	C	198	208	Right-handed alpha
Helix 46	AF1	C	208	221	Right-handed alpha
Helix 47	AF2	C	227	239	Right-handed alpha
Helix 48	AF3	C	242	255	Right-handed alpha
Helix 49	AF4	C	261	263	Right-handed 310
Helix 50	AF5	C	264	273	Right-handed alpha
Helix 51	AF6	C	295	300	Right-handed alpha
Helix 52	AF7	C	301	303	Right-handed 310
Helix 53	AF8	C	319	324	Right-handed alpha
Helix 54	AF9	C	324	338	Right-handed alpha
Helix 55	AG1	D	77	82	Right-handed 310
Helix 56	AG2	D	83	91	Right-handed alpha
Helix 57	AG3	D	118	133	Right-handed alpha
Helix 58	AG4	D	144	157	Right-handed alpha
Helix 59	AG5	D	174	179	Right-handed alpha
Helix 60	AG6	D	183	190	Right-handed alpha
Helix 61	AG7	D	190	197	Right-handed alpha
Helix 62	AG8	D	198	208	Right-handed alpha
Helix 63	AG9	D	208	221	Right-handed alpha
Helix 64	AH1	D	227	239	Right-handed alpha
Helix 65	AH2	D	242	255	Right-handed alpha
Helix 66	AH3	D	261	263	Right-handed 310
Helix 67	AH4	D	264	273	Right-handed alpha
Helix 68	AH5	D	295	303	Right-handed 310
Helix 69	AH6	D	319	324	Right-handed alpha
Helix 70	AH7	D	324	338	Right-handed alpha

There are 8 sheets in PDB entry 5BOV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	50	first strand
Strand 2	A	53	60	anti-parallel
Strand 3	A	107	108	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	50	first strand
Strand 2	A	53	60	anti-parallel
Strand 3	A	93	98	anti-parallel
Strand 4	A	66	71	parallel
Strand 5	A	138	142	parallel
Strand 6	A	161	167	parallel
Strand 7	A	281	286	parallel
Strand 8	A	307	312	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	50	first strand
Strand 2	B	53	60	anti-parallel
Strand 3	B	107	108	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	50	first strand
Strand 2	B	53	60	anti-parallel
Strand 3	B	94	98	anti-parallel
Strand 4	B	67	71	parallel
Strand 5	B	138	142	parallel
Strand 6	B	161	167	parallel
Strand 7	B	281	286	parallel
Strand 8	B	307	312	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	50	first strand
Strand 2	C	53	60	anti-parallel
Strand 3	C	107	108	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	50	first strand
Strand 2	C	53	60	anti-parallel
Strand 3	C	94	98	anti-parallel
Strand 4	C	67	71	parallel
Strand 5	C	138	142	parallel
Strand 6	C	161	167	parallel
Strand 7	C	281	286	parallel
Strand 8	C	307	312	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	50	first strand
Strand 2	D	53	60	anti-parallel
Strand 3	D	107	108	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	50	first strand
Strand 2	D	53	60	anti-parallel
Strand 3	D	94	98	anti-parallel
Strand 4	D	67	71	parallel
Strand 5	D	138	142	parallel
Strand 6	D	161	167	parallel
Strand 7	D	281	286	parallel
Strand 8	D	307	312	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BOV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BOV