Analysis of interatomic Contacts of Structural Units in PDB entry:
5BOZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BOZ entry

There are 7 chains in PDB entry 5BOZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 5	PRO 263
G	MET 0	SER 125
B	GLN 5	SER 264
H	ASN -1	SER 125
C	GLN 5	PRO 263
I	GLN 3	SER 125
D	GLN 5	GLY 131

There are 82 helices in PDB entry 5BOZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	33	Right-handed alpha
Helix 2	AA2	A	52	55	Right-handed 310
Helix 3	AA3	A	97	105	Right-handed alpha
Helix 4	AA4	A	122	131	Right-handed alpha
Helix 5	AA5	A	133	137	Right-handed 310
Helix 6	AA6	A	140	156	Right-handed alpha
Helix 7	AA7	A	160	175	Right-handed alpha
Helix 8	AA8	A	175	181	Right-handed alpha
Helix 9	AA9	A	181	194	Right-handed alpha
Helix 10	AB1	A	201	220	Right-handed alpha
Helix 11	AB2	A	246	248	Right-handed 310
Helix 12	AB3	G	87	91	Right-handed 310
Helix 13	AB4	G	109	113	Right-handed 310
Helix 14	AB5	B	17	33	Right-handed alpha
Helix 15	AB6	B	52	55	Right-handed 310
Helix 16	AB7	B	97	105	Right-handed alpha
Helix 17	AB8	B	122	131	Right-handed alpha
Helix 18	AB9	B	133	137	Right-handed 310
Helix 19	AC1	B	140	156	Right-handed alpha
Helix 20	AC2	B	160	175	Right-handed alpha
Helix 21	AC3	B	175	181	Right-handed alpha
Helix 22	AC4	B	181	194	Right-handed alpha
Helix 23	AC5	B	201	220	Right-handed alpha
Helix 24	AC6	B	246	248	Right-handed 310
Helix 25	AC7	H	87	91	Right-handed 310
Helix 26	AC8	H	109	113	Right-handed 310
Helix 27	AC9	C	17	33	Right-handed alpha
Helix 28	AD1	C	52	55	Right-handed 310
Helix 29	AD2	C	97	105	Right-handed alpha
Helix 30	AD3	C	122	131	Right-handed alpha
Helix 31	AD4	C	133	137	Right-handed 310
Helix 32	AD5	C	140	156	Right-handed alpha
Helix 33	AD6	C	160	175	Right-handed alpha
Helix 34	AD7	C	175	181	Right-handed alpha
Helix 35	AD8	C	181	194	Right-handed alpha
Helix 36	AD9	C	201	220	Right-handed alpha
Helix 37	AE1	C	246	248	Right-handed 310
Helix 38	AE2	I	87	91	Right-handed 310
Helix 39	AE3	I	109	113	Right-handed 310
Helix 40	AE4	D	17	33	Right-handed alpha
Helix 41	AE5	D	52	56	Right-handed alpha
Helix 42	AE6	D	97	105	Right-handed alpha
Helix 43	AE7	D	122	131	Right-handed alpha
Helix 44	AE8	D	133	137	Right-handed 310
Helix 45	AE9	D	140	156	Right-handed alpha
Helix 46	AF1	D	160	175	Right-handed alpha
Helix 47	AF2	D	175	181	Right-handed alpha
Helix 48	AF3	D	181	194	Right-handed alpha
Helix 49	AF4	D	201	220	Right-handed alpha
Helix 50	AF5	D	246	248	Right-handed 310
Helix 51	AF6	J	87	91	Right-handed 310
Helix 52	AF7	J	109	113	Right-handed 310
Helix 53	AF8	E	17	33	Right-handed alpha
Helix 54	AF9	E	52	55	Right-handed 310
Helix 55	AG1	E	97	105	Right-handed alpha
Helix 56	AG2	E	122	131	Right-handed alpha
Helix 57	AG3	E	133	137	Right-handed 310
Helix 58	AG4	E	140	156	Right-handed alpha
Helix 59	AG5	E	160	175	Right-handed alpha
Helix 60	AG6	E	175	181	Right-handed alpha
Helix 61	AG7	E	181	194	Right-handed alpha
Helix 62	AG8	E	201	220	Right-handed alpha
Helix 63	AG9	E	246	248	Right-handed 310
Helix 64	AH1	K	62	65	Right-handed 310
Helix 65	AH2	K	87	91	Right-handed 310
Helix 66	AH3	K	103	107	Right-handed 310
Helix 67	AH4	K	109	113	Right-handed 310
Helix 68	AH5	F	17	33	Right-handed alpha
Helix 69	AH6	F	52	55	Right-handed 310
Helix 70	AH7	F	97	105	Right-handed alpha
Helix 71	AH8	F	122	131	Right-handed alpha
Helix 72	AH9	F	133	137	Right-handed 310
Helix 73	AI1	F	140	156	Right-handed alpha
Helix 74	AI2	F	160	175	Right-handed alpha
Helix 75	AI3	F	175	181	Right-handed alpha
Helix 76	AI4	F	181	194	Right-handed alpha
Helix 77	AI5	F	201	220	Right-handed alpha
Helix 78	AI6	F	246	248	Right-handed 310
Helix 79	AI7	L	62	65	Right-handed 310
Helix 80	AI8	L	87	91	Right-handed 310
Helix 81	AI9	L	103	107	Right-handed 310
Helix 82	AJ1	L	109	113	Right-handed 310

There are 34 sheets in PDB entry 5BOZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	12	first strand
Strand 2	A	57	63	parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	81	86	anti-parallel
Strand 5	A	89	92	anti-parallel
Strand 6	A	113	116	parallel
Strand 7	B	113	116	anti-parallel
Strand 8	B	89	92	parallel
Strand 9	B	81	86	anti-parallel
Strand 10	B	69	75	anti-parallel
Strand 11	B	57	63	anti-parallel
Strand 12	B	8	12	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	39	first strand
Strand 2	A	42	43	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	233	first strand
Strand 2	A	239	244	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	7	first strand
Strand 2	G	18	23	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	120	123	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	46	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	120	123	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	115	116	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	39	first strand
Strand 2	B	42	43	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	233	first strand
Strand 2	B	239	244	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	120	123	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	120	123	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	115	116	anti-parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	12	first strand
Strand 2	C	57	63	parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	81	86	anti-parallel
Strand 5	C	89	92	anti-parallel
Strand 6	C	113	116	parallel
Strand 7	D	113	116	anti-parallel
Strand 8	D	89	92	parallel
Strand 9	D	81	86	anti-parallel
Strand 10	D	69	75	anti-parallel
Strand 11	D	57	63	anti-parallel
Strand 12	D	8	12	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	42	43	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	233	first strand
Strand 2	C	239	244	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	7	first strand
Strand 2	I	18	23	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	11	first strand
Strand 2	I	120	123	parallel
Strand 3	I	92	98	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	11	first strand
Strand 2	I	120	123	parallel
Strand 3	I	92	98	anti-parallel
Strand 4	I	115	116	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	39	first strand
Strand 2	D	42	43	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	233	first strand
Strand 2	D	239	244	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	7	first strand
Strand 2	J	18	23	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	120	123	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	33	39	anti-parallel
Strand 5	J	46	51	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	120	123	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	115	116	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	12	first strand
Strand 2	E	57	63	parallel
Strand 3	E	69	75	anti-parallel
Strand 4	E	81	86	anti-parallel
Strand 5	E	89	92	anti-parallel
Strand 6	E	113	116	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	39	first strand
Strand 2	E	42	43	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	225	233	first strand
Strand 2	E	239	244	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	7	first strand
Strand 2	K	18	23	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	120	124	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	46	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	120	124	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	115	116	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	12	first strand
Strand 2	F	57	63	parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	81	86	anti-parallel
Strand 5	F	89	92	anti-parallel
Strand 6	F	113	116	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	39	first strand
Strand 2	F	42	43	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	225	233	first strand
Strand 2	F	239	244	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	18	23	anti-parallel
Strand 3	L	78	83	anti-parallel
Strand 4	L	68	73	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	120	124	parallel
Strand 3	L	92	99	anti-parallel
Strand 4	L	33	39	anti-parallel
Strand 5	L	45	51	anti-parallel
Strand 6	L	58	60	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	120	124	parallel
Strand 3	L	92	99	anti-parallel
Strand 4	L	115	116	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BOZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BOZ