Analysis of interatomic Contacts of Structural Units in PDB entry:
5BP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BP1 entry

There is 1 chain in PDB entry 5BP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4SER 762
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5BP1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 35Right-handed alpha
Helix 2
AA2
A
79 83Right-handed 310
Helix 3
AA3
A
85 92Right-handed alpha
Helix 4
AA4
A
93 110Right-handed alpha
Helix 5
AA5
A
113 118Right-handed 310
Helix 6
AA6
A
155 166Right-handed alpha
Helix 7
AA7
A
182 194Right-handed alpha
Helix 8
AA8
A
253 260Right-handed alpha
Helix 9
AA9
A
289 301Right-handed alpha
Helix 10
AB1
A
303 305Right-handed 310
Helix 11
AB2
A
320 332Right-handed alpha
Helix 12
AB3
A
343 348Right-handed alpha
Helix 13
AB4
A
350 352Right-handed 310
Helix 14
AB5
A
353 368Right-handed alpha
Helix 15
AB6
A
381 386Right-handed alpha
Helix 16
AB7
A
457 475Right-handed alpha
Helix 17
AB8
A
486 497Right-handed alpha
Helix 18
AB9
A
511 524Right-handed alpha
Helix 19
AC1
A
555 562Right-handed alpha
Helix 20
AC2
A
562 581Right-handed alpha
Helix 21
AC3
A
583 590Right-handed alpha
Helix 22
AC4
A
599 617Right-handed alpha
Helix 23
AC5
A
630 639Right-handed alpha
Helix 24
AC6
A
643 659Right-handed alpha
Helix 25
AC7
A
660 662Right-handed 310
Helix 26
AC8
A
673 684Right-handed alpha
Helix 27
AC9
A
705 718Right-handed alpha
Helix 28
AD1
A
734 739Right-handed 310
Helix 29
AD2
A
740 748Right-handed alpha
Helix 30
AD3
A
775 785Right-handed alpha
Helix 31
AD4
A
788 799Right-handed alpha
Helix 32
AD5
A
813 824Right-handed alpha
Helix 33
AD6
A
844 855Right-handed alpha
Helix 34
AD7
A
859 864Right-handed alpha
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There are 7 sheets in PDB entry 5BP1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 175first strand
Strand 2
A
122 128parallel
Strand 3
A
199 206parallel
Strand 4
A
244 252anti-parallel
Strand 5
A
9 17anti-parallel
Strand 6
A
265 274anti-parallel
Strand 7
A
420 428anti-parallel
Strand 8
A
409 415anti-parallel
Strand 9
A
307 311parallel
Strand 10
A
339 341parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
67 68anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
880 881anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
398 399anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 455first strand
Strand 2
A
503 509anti-parallel
Strand 3
A
530 531anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
760 761first strand
Strand 2
A
624 627parallel
Strand 3
A
541 544parallel
Strand 4
A
803 806parallel
Strand 5
A
829 832parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
689 696first strand
Strand 2
A
699 704anti-parallel
Strand 3
A
666 670anti-parallel
Strand 4
A
723 726anti-parallel
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