Analysis of interatomic Contacts of Structural Units in PDB entry:
5BP3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BP3 entry

There are 2 chains in PDB entry 5BP3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 895GLU 1183
B
 VAL 895ASP 1180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 5BP3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
928 932Right-handed 310
Helix 2
AA2
A
943 960Right-handed alpha
Helix 3
AA3
A
1027 1034Right-handed alpha
Helix 4
AA4
A
1041 1051Right-handed alpha
Helix 5
AA5
A
1057 1060Right-handed 310
Helix 6
AA6
A
1082 1090Right-handed 310
Helix 7
AA7
A
1095 1107Right-handed alpha
Helix 8
AA8
A
1109 1116Right-handed alpha
Helix 9
AA9
B
928 932Right-handed 310
Helix 10
AB1
B
943 960Right-handed alpha
Helix 11
AB2
B
1027 1035Right-handed alpha
Helix 12
AB3
B
1041 1051Right-handed alpha
Helix 13
AB4
B
1057 1060Right-handed 310
Helix 14
AB5
B
1082 1086Right-handed 310
Helix 15
AB6
B
1095 1107Right-handed alpha
Helix 16
AB7
B
1109 1116Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5BP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
906 909first strand
Strand 2
A
916 922anti-parallel
Strand 3
A
981 990anti-parallel
Strand 4
A
993 1000anti-parallel
Strand 5
A
1007 1015anti-parallel
Strand 6
A
964 969anti-parallel
Strand 7
A
1121 1130anti-parallel
Strand 8
A
1165 1175anti-parallel
Strand 9
A
1151 1160anti-parallel
Strand 10
A
1137 1148anti-parallel
Strand 11
A
1074 1079anti-parallel
Strand 12
A
1062 1067anti-parallel
Strand 13
A
1037 1040anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
939 940first strand
Strand 2
A
934 936anti-parallel
Strand 3
A
1053 1055anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
906 909first strand
Strand 2
B
916 922anti-parallel
Strand 3
B
981 990anti-parallel
Strand 4
B
993 1000anti-parallel
Strand 5
B
1007 1015anti-parallel
Strand 6
B
964 970anti-parallel
Strand 7
B
1121 1130anti-parallel
Strand 8
B
1165 1175anti-parallel
Strand 9
B
1151 1159anti-parallel
Strand 10
B
1139 1148anti-parallel
Strand 11
B
1074 1079anti-parallel
Strand 12
B
1062 1067anti-parallel
Strand 13
B
1037 1040anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
939 940first strand
Strand 2
B
934 936anti-parallel
Strand 3
B
1053 1055anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il