Analysis of interatomic Contacts of Structural Units in PDB entry:
5BP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BP7 entry

There are 3 chains in PDB entry 5BP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ARG 249
B
 LEU 2ARG 249
C
 MSE 1ARG 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5BP7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
22 33Right-handed alpha
Helix 3
AA3
A
49 60Right-handed alpha
Helix 4
AA4
A
69 83Right-handed alpha
Helix 5
AA5
A
113 118Right-handed 310
Helix 6
AA6
A
119 129Right-handed alpha
Helix 7
AA7
A
150 157Right-handed alpha
Helix 8
AA8
A
161 165Right-handed 310
Helix 9
AA9
A
167 178Right-handed alpha
Helix 10
AB1
A
189 211Right-handed alpha
Helix 11
AB2
A
216 234Right-handed alpha
Helix 12
AB3
A
234 238Right-handed alpha
Helix 13
AB4
B
5 13Right-handed alpha
Helix 14
AB5
B
22 33Right-handed alpha
Helix 15
AB6
B
49 60Right-handed alpha
Helix 16
AB7
B
69 83Right-handed alpha
Helix 17
AB8
B
113 118Right-handed 310
Helix 18
AB9
B
119 129Right-handed alpha
Helix 19
AC1
B
150 157Right-handed alpha
Helix 20
AC2
B
161 165Right-handed 310
Helix 21
AC3
B
167 178Right-handed alpha
Helix 22
AC4
B
189 211Right-handed alpha
Helix 23
AC5
B
216 234Right-handed alpha
Helix 24
AC6
B
234 238Right-handed alpha
Helix 25
AC7
C
5 13Right-handed alpha
Helix 26
AC8
C
22 33Right-handed alpha
Helix 27
AC9
C
49 60Right-handed alpha
Helix 28
AD1
C
69 83Right-handed alpha
Helix 29
AD2
C
113 118Right-handed 310
Helix 30
AD3
C
119 129Right-handed alpha
Helix 31
AD4
C
150 157Right-handed alpha
Helix 32
AD5
C
161 165Right-handed 310
Helix 33
AD6
C
167 178Right-handed alpha
Helix 34
AD7
C
189 211Right-handed alpha
Helix 35
AD8
C
216 234Right-handed alpha
Helix 36
AD9
C
234 238Right-handed alpha
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There are 3 sheets in PDB entry 5BP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 93first strand
Strand 2
A
62 67parallel
Strand 3
A
40 44parallel
Strand 4
A
105 111parallel
Strand 5
A
131 144parallel
Strand 6
A
239 248anti-parallel
Strand 7
A
180 187anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 93first strand
Strand 2
B
62 67parallel
Strand 3
B
40 44parallel
Strand 4
B
105 111parallel
Strand 5
B
131 144parallel
Strand 6
B
239 248anti-parallel
Strand 7
B
180 187anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 93first strand
Strand 2
C
62 67parallel
Strand 3
C
40 44parallel
Strand 4
C
105 111parallel
Strand 5
C
131 144parallel
Strand 6
C
239 248anti-parallel
Strand 7
C
180 187anti-parallel
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