Analysis of interatomic Contacts of Structural Units in PDB entry:
5BP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BP9 entry

There is 1 chain in PDB entry 5BP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 16LEU 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5BP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 26Right-handed 310
Helix 2
AA2
A
27 40Right-handed alpha
Helix 3
AA3
A
59 64Right-handed 310
Helix 4
AA4
A
70 80Right-handed alpha
Helix 5
AA5
A
92 101Right-handed alpha
Helix 6
AA6
A
111 122Right-handed alpha
Helix 7
AA7
A
148 154Right-handed 310
Helix 8
AA8
A
155 157Right-handed 310
Helix 9
AA9
A
158 169Right-handed alpha
Helix 10
AB1
A
183 188Right-handed 310
Helix 11
AB2
A
226 237Right-handed alpha
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There are 3 sheets in PDB entry 5BP9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
45 48anti-parallel
Strand 3
A
205 212anti-parallel
Strand 4
A
215 216anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
45 48anti-parallel
Strand 3
A
205 212anti-parallel
Strand 4
A
220 223anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
104 109parallel
Strand 3
A
83 87parallel
Strand 4
A
140 145parallel
Strand 5
A
170 181parallel
Strand 6
A
251 258anti-parallel
Strand 7
A
239 246anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il