Analysis of interatomic Contacts of Structural Units in PDB entry:
5BPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BPP entry

There is 1 chain in PDB entry 5BPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4ASP 610
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5BPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 83Right-handed 310
Helix 2
AA2
A
119 123Right-handed 310
Helix 3
AA3
A
139 143Right-handed 310
Helix 4
AA4
A
198 202Right-handed 310
Helix 5
AA5
A
223 225Right-handed 310
Helix 6
AA6
A
226 234Right-handed alpha
Helix 7
AA7
A
236 249Right-handed alpha
Helix 8
AA8
A
280 283Right-handed 310
Helix 9
AA9
A
290 299Right-handed alpha
Helix 10
AB1
A
310 312Right-handed 310
Helix 11
AB2
A
313 334Right-handed alpha
Helix 12
AB3
A
334 357Right-handed alpha
Helix 13
AB4
A
360 364Right-handed 310
Helix 14
AB5
A
373 378Right-handed alpha
Helix 15
AB6
A
380 398Right-handed alpha
Helix 16
AB7
A
399 415Right-handed alpha
Helix 17
AB8
A
420 432Right-handed alpha
Helix 18
AB9
A
435 440Right-handed alpha
Helix 19
AC1
A
443 450Right-handed alpha
Helix 20
AC2
A
465 478Right-handed alpha
Helix 21
AC3
A
479 486Right-handed 310
Helix 22
AC4
A
487 492Right-handed 310
Helix 23
AC5
A
495 508Right-handed alpha
Helix 24
AC6
A
513 525Right-handed alpha
Helix 25
AC7
A
526 529Right-handed 310
Helix 26
AC8
A
531 545Right-handed alpha
Helix 27
AC9
A
547 549Right-handed 310
Helix 28
AD1
A
550 561Right-handed alpha
Helix 29
AD2
A
563 577Right-handed alpha
Helix 30
AD3
A
577 592Right-handed alpha
Helix 31
AD4
A
593 595Right-handed 310
Helix 32
AD5
A
596 607Right-handed alpha
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There are 5 sheets in PDB entry 5BPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
59 66anti-parallel
Strand 3
A
99 108anti-parallel
Strand 4
A
33 44anti-parallel
Strand 5
A
16 28anti-parallel
Strand 6
A
154 163parallel
Strand 7
A
186 197anti-parallel
Strand 8
A
173 179anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 56first strand
Strand 2
A
84 94anti-parallel
Strand 3
A
73 75anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
130 133anti-parallel
Strand 3
A
204 207anti-parallel
Strand 4
A
167 170anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 215first strand
Strand 2
A
218 222anti-parallel
Strand 3
A
257 260parallel
Strand 4
A
275 278parallel
Strand 5
A
269 270anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
417 419parallel
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