Analysis of interatomic Contacts of Structural Units in PDB entry:
5BPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BPT entry

There is 1 chain in PDB entry 5BPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ASP 740
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5BPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 45Right-handed 310
Helix 2
AA2
A
54 58Right-handed 310
Helix 3
AA3
A
116 132Right-handed alpha
Helix 4
AA4
A
156 161Right-handed alpha
Helix 5
AA5
A
231 237Right-handed alpha
Helix 6
AA6
A
237 254Right-handed alpha
Helix 7
AA7
A
255 280Right-handed alpha
Helix 8
AA8
A
310 318Right-handed alpha
Helix 9
AA9
A
319 343Right-handed alpha
Helix 10
AB1
A
343 364Right-handed alpha
Helix 11
AB2
A
375 416Right-handed alpha
Helix 12
AB3
A
444 452Right-handed alpha
Helix 13
AB4
A
514 541Right-handed alpha
Helix 14
AB5
A
663 668Right-handed alpha
Helix 15
AB6
A
685 690Right-handed 310
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There are 7 sheets in PDB entry 5BPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
733 738anti-parallel
Strand 3
A
723 727anti-parallel
Strand 4
A
714 718anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
27 31anti-parallel
Strand 3
A
37 41anti-parallel
Strand 4
A
47 51anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
82 87anti-parallel
Strand 4
A
93 98anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 110first strand
Strand 2
A
167 173anti-parallel
Strand 3
A
178 182anti-parallel
Strand 4
A
186 191anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 203first strand
Strand 2
A
210 216anti-parallel
Strand 3
A
223 230anti-parallel
Strand 4
A
542 551anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 569first strand
Strand 2
A
576 581anti-parallel
Strand 3
A
591 597anti-parallel
Strand 4
A
608 612anti-parallel
Strand 5
A
695 697parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 639first strand
Strand 2
A
642 648anti-parallel
Strand 3
A
656 662anti-parallel
Strand 4
A
706 707anti-parallel
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