Analysis of interatomic Contacts of Structural Units in PDB entry:
5BPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BPV entry

There are 2 chains in PDB entry 5BPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 217ILE 340
B
 ASP 218ILE 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5BPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
220 232Right-handed alpha
Helix 2
AA2
A
237 253Right-handed alpha
Helix 3
AA3
A
255 269Right-handed alpha
Helix 4
AA4
A
272 284Right-handed alpha
Helix 5
AA5
A
285 288Right-handed 310
Helix 6
AA6
A
299 303Right-handed 310
Helix 7
AA7
A
304 309Right-handed 310
Helix 8
AA8
A
319 322Right-handed 310
Helix 9
AA9
B
220 232Right-handed alpha
Helix 10
AB1
B
237 253Right-handed alpha
Helix 11
AB2
B
255 269Right-handed alpha
Helix 12
AB3
B
272 284Right-handed alpha
Helix 13
AB4
B
285 288Right-handed 310
Helix 14
AB5
B
299 303Right-handed 310
Helix 15
AB6
B
304 309Right-handed 310
Helix 16
AB7
B
319 322Right-handed 310
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There are 2 sheets in PDB entry 5BPV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
324 329parallel
Strand 3
A
335 339anti-parallel
Strand 4
A
311 312anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
324 329parallel
Strand 3
B
335 339anti-parallel
Strand 4
B
311 312anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il