Analysis of interatomic Contacts of Structural Units in PDB entry:
5BPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BPW entry

There is 1 chain in PDB entry 5BPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6SER 757
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 5BPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 52Right-handed 310
Helix 2
AA2
A
133 137Right-handed alpha
Helix 3
AA3
A
161 170Right-handed alpha
Helix 4
AA4
A
238 244Right-handed alpha
Helix 5
AA5
A
244 285Right-handed alpha
Helix 6
AA6
A
326 351Right-handed alpha
Helix 7
AA7
A
351 371Right-handed alpha
Helix 8
AA8
A
372 377Right-handed alpha
Helix 9
AA9
A
382 427Right-handed alpha
Helix 10
AB1
A
447 457Right-handed alpha
Helix 11
AB2
A
474 479Right-handed alpha
Helix 12
AB3
A
525 548Right-handed alpha
Helix 13
AB4
A
672 674Right-handed 310
Helix 14
AB5
A
678 683Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 5BPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 18first strand
Strand 2
A
740 745anti-parallel
Strand 3
A
730 734anti-parallel
Strand 4
A
721 724anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 28first strand
Strand 2
A
34 39anti-parallel
Strand 3
A
44 48anti-parallel
Strand 4
A
54 58anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 73first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
89 94anti-parallel
Strand 4
A
100 105anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 117first strand
Strand 2
A
174 179anti-parallel
Strand 3
A
184 189anti-parallel
Strand 4
A
194 199anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 210first strand
Strand 2
A
216 223anti-parallel
Strand 3
A
229 237anti-parallel
Strand 4
A
551 559anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 578first strand
Strand 2
A
583 591anti-parallel
Strand 3
A
596 604anti-parallel
Strand 4
A
615 624anti-parallel
Strand 5
A
631 632anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 578first strand
Strand 2
A
583 591anti-parallel
Strand 3
A
596 604anti-parallel
Strand 4
A
615 624anti-parallel
Strand 5
A
702 707parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
636 645first strand
Strand 2
A
648 655anti-parallel
Strand 3
A
664 670anti-parallel
Strand 4
A
711 713anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il