Analysis of interatomic Contacts of Structural Units in PDB entry:
5BQ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BQ3 entry

There are 4 chains in PDB entry 5BQ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 40	PHE 352
B	SER 40	PHE 352
C	GLY 41	PHE 352
D	GLY 41	PHE 352

There are 49 helices in PDB entry 5BQ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	77	Right-handed alpha
Helix 2	AA2	A	94	104	Right-handed alpha
Helix 3	AA3	A	119	130	Right-handed alpha
Helix 4	AA4	A	153	170	Right-handed alpha
Helix 5	AA5	A	184	201	Right-handed alpha
Helix 6	AA6	A	218	233	Right-handed alpha
Helix 7	AA7	A	243	257	Right-handed alpha
Helix 8	AA8	A	270	281	Right-handed alpha
Helix 9	AA9	A	290	307	Right-handed alpha
Helix 10	AB1	A	321	323	Right-handed 310
Helix 11	AB2	A	329	331	Right-handed 310
Helix 12	AB3	A	346	350	Right-handed 310
Helix 13	AB4	B	59	77	Right-handed alpha
Helix 14	AB5	B	94	104	Right-handed alpha
Helix 15	AB6	B	119	130	Right-handed alpha
Helix 16	AB7	B	153	170	Right-handed alpha
Helix 17	AB8	B	184	201	Right-handed alpha
Helix 18	AB9	B	218	233	Right-handed alpha
Helix 19	AC1	B	243	257	Right-handed alpha
Helix 20	AC2	B	270	280	Right-handed alpha
Helix 21	AC3	B	290	307	Right-handed alpha
Helix 22	AC4	B	321	323	Right-handed 310
Helix 23	AC5	B	329	331	Right-handed 310
Helix 24	AC6	B	346	350	Right-handed 310
Helix 25	AC7	C	59	77	Right-handed alpha
Helix 26	AC8	C	94	104	Right-handed alpha
Helix 27	AC9	C	119	130	Right-handed alpha
Helix 28	AD1	C	153	170	Right-handed alpha
Helix 29	AD2	C	184	201	Right-handed alpha
Helix 30	AD3	C	202	205	Right-handed 310
Helix 31	AD4	C	218	233	Right-handed alpha
Helix 32	AD5	C	243	257	Right-handed alpha
Helix 33	AD6	C	270	280	Right-handed alpha
Helix 34	AD7	C	290	307	Right-handed alpha
Helix 35	AD8	C	321	323	Right-handed 310
Helix 36	AD9	C	329	331	Right-handed 310
Helix 37	AE1	C	346	350	Right-handed 310
Helix 38	AE2	D	59	77	Right-handed alpha
Helix 39	AE3	D	94	104	Right-handed alpha
Helix 40	AE4	D	119	130	Right-handed alpha
Helix 41	AE5	D	153	170	Right-handed alpha
Helix 42	AE6	D	184	201	Right-handed alpha
Helix 43	AE7	D	218	233	Right-handed alpha
Helix 44	AE8	D	243	257	Right-handed alpha
Helix 45	AE9	D	270	280	Right-handed alpha
Helix 46	AF1	D	290	307	Right-handed alpha
Helix 47	AF2	D	321	323	Right-handed 310
Helix 48	AF3	D	329	331	Right-handed 310
Helix 49	AF4	D	346	350	Right-handed 310

There are 16 sheets in PDB entry 5BQ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	49	53	parallel
Strand 3	A	108	111	parallel
Strand 4	A	132	136	parallel
Strand 5	A	147	150	parallel
Strand 6	A	333	335	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	214	first strand
Strand 2	A	173	179	parallel
Strand 3	A	238	241	parallel
Strand 4	A	264	267	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	288	first strand
Strand 2	A	340	342	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	319	first strand
Strand 2	A	325	327	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	83	first strand
Strand 2	B	49	53	parallel
Strand 3	B	108	111	parallel
Strand 4	B	132	136	parallel
Strand 5	B	147	150	parallel
Strand 6	B	333	335	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	214	first strand
Strand 2	B	173	179	parallel
Strand 3	B	238	241	parallel
Strand 4	B	264	267	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	288	first strand
Strand 2	B	340	342	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	325	327	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	83	first strand
Strand 2	C	49	53	parallel
Strand 3	C	108	111	parallel
Strand 4	C	132	136	parallel
Strand 5	C	147	150	parallel
Strand 6	C	333	335	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	214	first strand
Strand 2	C	173	179	parallel
Strand 3	C	238	241	parallel
Strand 4	C	264	267	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	288	first strand
Strand 2	C	340	342	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	319	first strand
Strand 2	C	325	327	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	83	first strand
Strand 2	D	49	53	parallel
Strand 3	D	108	111	parallel
Strand 4	D	132	136	parallel
Strand 5	D	147	150	parallel
Strand 6	D	333	335	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	214	first strand
Strand 2	D	173	179	parallel
Strand 3	D	238	241	parallel
Strand 4	D	264	267	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	288	first strand
Strand 2	D	340	342	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	319	first strand
Strand 2	D	325	327	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BQ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BQ3