Analysis of interatomic Contacts of Structural Units in PDB entry:
5BQ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BQ8 entry

There are 15 chains in PDB entry 5BQ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 35LEU 85
A
 GLN 87LEU 103
A
 ALA 105SER 138
B
 PRO 36TYR 53
B
 CYS 55LEU 85
B
 GLN 87LEU 103
B
 ALA 105ASN 132
C
 ASP 35LEU 85
C
 GLN 87LEU 103
C
 ALA 105SER 133
D
 ARG 37SER 57
D
 MET 59LEU 85
D
 GLN 87SER 101
D
 LEU 103LEU 103
D
 ALA 105SER 138
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 5BQ8

There are 8 sheets in PDB entry 5BQ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 48first strand
Strand 2
A
58 67anti-parallel
Strand 3
B
73 77anti-parallel
Strand 4
B
89 92anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
73 77anti-parallel
Strand 3
B
58 67anti-parallel
Strand 4
B
40 48anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
B
114 130anti-parallel
Strand 3
B
94 110anti-parallel
Strand 4
B
55 56anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 109first strand
Strand 2
A
115 130anti-parallel
Strand 3
B
80 81anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 48first strand
Strand 2
C
58 67anti-parallel
Strand 3
D
73 77anti-parallel
Strand 4
D
89 92anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 92first strand
Strand 2
C
73 77anti-parallel
Strand 3
D
53 67anti-parallel
Strand 4
D
40 50anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 81first strand
Strand 2
D
114 130anti-parallel
Strand 3
D
94 110anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 110first strand
Strand 2
C
114 130anti-parallel
Strand 3
D
80 81anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il