Analysis of interatomic Contacts of Structural Units in PDB entry:
5BQ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BQ9 entry

There are 2 chains in PDB entry 5BQ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -1THR 590
B
 ASN -5THR 590
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5BQ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 39Right-handed alpha
Helix 2
AA2
A
82 94Right-handed alpha
Helix 3
AA3
A
298 301Right-handed 310
Helix 4
AA4
A
302 316Right-handed alpha
Helix 5
AA5
A
322 326Right-handed 310
Helix 6
AA6
A
329 337Right-handed alpha
Helix 7
AA7
A
344 349Right-handed 310
Helix 8
AA8
A
367 389Right-handed alpha
Helix 9
AA9
A
391 396Right-handed alpha
Helix 10
AB1
A
398 409Right-handed alpha
Helix 11
AB2
A
410 412Right-handed 310
Helix 12
AB3
A
421 436Right-handed alpha
Helix 13
AB4
A
443 463Right-handed alpha
Helix 14
AB5
A
463 468Right-handed alpha
Helix 15
AB6
A
474 485Right-handed alpha
Helix 16
AB7
A
494 507Right-handed alpha
Helix 17
AB8
A
508 511Right-handed 310
Helix 18
AB9
A
513 521Right-handed alpha
Helix 19
AC1
A
521 529Right-handed alpha
Helix 20
AC2
A
532 550Right-handed alpha
Helix 21
AC3
A
564 573Right-handed alpha
Helix 22
AC4
A
574 583Right-handed alpha
Helix 23
AC5
B
22 40Right-handed alpha
Helix 24
AC6
B
82 94Right-handed alpha
Helix 25
AC7
B
298 301Right-handed 310
Helix 26
AC8
B
302 316Right-handed alpha
Helix 27
AC9
B
322 326Right-handed 310
Helix 28
AD1
B
329 338Right-handed alpha
Helix 29
AD2
B
344 350Right-handed 310
Helix 30
AD3
B
367 389Right-handed alpha
Helix 31
AD4
B
391 396Right-handed alpha
Helix 32
AD5
B
398 409Right-handed alpha
Helix 33
AD6
B
410 412Right-handed 310
Helix 34
AD7
B
421 434Right-handed alpha
Helix 35
AD8
B
443 463Right-handed alpha
Helix 36
AD9
B
463 468Right-handed alpha
Helix 37
AE1
B
474 485Right-handed alpha
Helix 38
AE2
B
494 507Right-handed alpha
Helix 39
AE3
B
508 511Right-handed 310
Helix 40
AE4
B
513 521Right-handed alpha
Helix 41
AE5
B
521 529Right-handed alpha
Helix 42
AE6
B
532 550Right-handed alpha
Helix 43
AE7
B
564 573Right-handed alpha
Helix 44
AE8
B
574 584Right-handed alpha
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There are 6 sheets in PDB entry 5BQ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
54 56anti-parallel
Strand 3
A
15 20anti-parallel
Strand 4
A
2 8anti-parallel
Strand 5
A
121 124anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
Strand 2
A
76 79anti-parallel
Strand 3
A
108 111anti-parallel
Strand 4
A
100 102anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 356first strand
Strand 2
A
359 362anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
53 56anti-parallel
Strand 3
B
13 20anti-parallel
Strand 4
B
2 10anti-parallel
Strand 5
B
122 124anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 71first strand
Strand 2
B
75 79anti-parallel
Strand 3
B
108 111anti-parallel
Strand 4
B
100 101anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 356first strand
Strand 2
B
359 362anti-parallel
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