Analysis of interatomic Contacts of Structural Units in PDB entry:
5BQE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BQE entry

There are 9 chains in PDB entry 5BQE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 33SER 133
B
 ASP 33SER 57
B
 MET 59LEU 85
B
 GLN 87SER 101
B
 LEU 103LEU 103
B
 ALA 105SER 133
C
 ARG 43THR 61
C
 MET 63VAL 124
C
 ARG 126ASP 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5BQE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
50 54Right-handed 310
Helix 2
AA2
C
71 80Right-handed alpha
Helix 3
AA3
C
82 88Right-handed alpha
Helix 4
AA4
C
93 103Right-handed alpha
Helix 5
AA5
C
117 135Right-handed alpha
Helix 6
AA6
C
140 148Right-handed 310
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There are 6 sheets in PDB entry 5BQE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 48first strand
Strand 2
A
58 67anti-parallel
Strand 3
B
73 77anti-parallel
Strand 4
B
89 92anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
73 77anti-parallel
Strand 3
B
58 67anti-parallel
Strand 4
B
40 48anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 109first strand
Strand 2
A
115 130anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 107first strand
Strand 2
B
117 130anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 47first strand
Strand 2
C
60 61anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
115 116first strand
Strand 2
C
158 159parallel
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