Analysis of interatomic Contacts of Structural Units in PDB entry:
5BQM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BQM entry

There are 3 chains in PDB entry 5BQM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	THR 443
B	GLY 509	PHE 911
C	THR 2	PRO 419

There are 49 helices in PDB entry 5BQM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	98	Right-handed alpha
Helix 2	AA2	A	100	113	Right-handed alpha
Helix 3	AA3	A	168	173	Right-handed 310
Helix 4	AA4	A	178	184	Right-handed alpha
Helix 5	AA5	A	222	239	Right-handed alpha
Helix 6	AA6	A	267	274	Right-handed alpha
Helix 7	AA7	A	275	281	Right-handed 310
Helix 8	AA8	A	282	307	Right-handed alpha
Helix 9	AA9	A	312	317	Right-handed 310
Helix 10	AB1	A	318	331	Right-handed alpha
Helix 11	AB2	A	343	356	Right-handed alpha
Helix 12	AB3	A	359	367	Right-handed alpha
Helix 13	AB4	B	535	539	Right-handed 310
Helix 14	AB5	B	607	616	Right-handed alpha
Helix 15	AB6	B	629	636	Right-handed alpha
Helix 16	AB7	B	644	654	Right-handed alpha
Helix 17	AB8	B	659	676	Right-handed alpha
Helix 18	AB9	B	693	699	Right-handed alpha
Helix 19	AC1	B	708	717	Right-handed alpha
Helix 20	AC2	B	718	722	Right-handed 310
Helix 21	AC3	B	746	811	Right-handed alpha
Helix 22	AC4	B	815	856	Right-handed alpha
Helix 23	AC5	B	857	883	Right-handed alpha
Helix 24	AC6	B	891	897	Right-handed alpha
Helix 25	AC7	B	899	904	Right-handed alpha
Helix 26	AC8	C	79	98	Right-handed alpha
Helix 27	AC9	C	100	113	Right-handed alpha
Helix 28	AD1	C	179	184	Right-handed alpha
Helix 29	AD2	C	222	240	Right-handed alpha
Helix 30	AD3	C	267	274	Right-handed alpha
Helix 31	AD4	C	275	281	Right-handed 310
Helix 32	AD5	C	282	307	Right-handed alpha
Helix 33	AD6	C	312	317	Right-handed 310
Helix 34	AD7	C	318	331	Right-handed alpha
Helix 35	AD8	C	343	356	Right-handed alpha
Helix 36	AD9	C	359	367	Right-handed alpha
Helix 37	AE1	D	529	533	Right-handed 310
Helix 38	AE2	D	607	616	Right-handed alpha
Helix 39	AE3	D	629	636	Right-handed alpha
Helix 40	AE4	D	644	654	Right-handed alpha
Helix 41	AE5	D	659	676	Right-handed alpha
Helix 42	AE6	D	693	699	Right-handed alpha
Helix 43	AE7	D	708	717	Right-handed alpha
Helix 44	AE8	D	718	722	Right-handed 310
Helix 45	AE9	D	747	778	Right-handed alpha
Helix 46	AF1	D	778	811	Right-handed alpha
Helix 47	AF2	D	819	856	Right-handed alpha
Helix 48	AF3	D	857	883	Right-handed alpha
Helix 49	AF4	D	896	902	Right-handed alpha

There are 20 sheets in PDB entry 5BQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	193	first strand
Strand 2	A	156	159	parallel
Strand 3	A	43	45	parallel
Strand 4	A	34	40	anti-parallel
Strand 5	A	19	23	anti-parallel
Strand 6	A	136	141	anti-parallel
Strand 7	A	146	152	anti-parallel
Strand 8	B	578	579	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	309	311	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	220	first strand
Strand 2	A	198	203	anti-parallel
Strand 3	A	380	384	anti-parallel
Strand 4	A	422	423	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	265	266	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	340	341	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	520	first strand
Strand 2	A	433	437	anti-parallel
Strand 3	B	599	602	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	513	first strand
Strand 2	D	909	911	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	542	first strand
Strand 2	B	736	737	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	625	627	first strand
Strand 2	B	639	641	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	193	first strand
Strand 2	C	156	159	parallel
Strand 3	C	43	45	parallel
Strand 4	C	34	40	anti-parallel
Strand 5	C	19	23	anti-parallel
Strand 6	C	136	141	anti-parallel
Strand 7	C	146	152	anti-parallel
Strand 8	D	578	579	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	429	430	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	128	first strand
Strand 2	C	309	311	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	201	first strand
Strand 2	C	380	384	anti-parallel
Strand 3	C	422	423	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	249	first strand
Strand 2	C	265	266	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	334	first strand
Strand 2	C	340	342	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	520	first strand
Strand 2	C	433	437	anti-parallel
Strand 3	D	599	602	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	443	first strand
Strand 2	D	510	513	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	541	542	first strand
Strand 2	D	736	737	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	625	627	first strand
Strand 2	D	639	641	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	679	680	first strand
Strand 2	D	689	690	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BQM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BQM