Analysis of interatomic Contacts of Structural Units in PDB entry:
5BQN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BQN entry

There is 1 chain in PDB entry 5BQN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 871
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5BQN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 98Right-handed alpha
Helix 2
AA2
A
100 113Right-handed alpha
Helix 3
AA3
A
169 173Right-handed 310
Helix 4
AA4
A
175 177Right-handed 310
Helix 5
AA5
A
178 184Right-handed alpha
Helix 6
AA6
A
222 239Right-handed alpha
Helix 7
AA7
A
267 274Right-handed alpha
Helix 8
AA8
A
275 281Right-handed 310
Helix 9
AA9
A
282 307Right-handed alpha
Helix 10
AB1
A
312 317Right-handed 310
Helix 11
AB2
A
318 331Right-handed alpha
Helix 12
AB3
A
343 356Right-handed alpha
Helix 13
AB4
A
359 367Right-handed alpha
Helix 14
AB5
A
401 405Right-handed 310
Helix 15
AB6
A
466 468Right-handed 310
Helix 16
AB7
A
473 477Right-handed 310
Helix 17
AB8
A
479 483Right-handed 310
Helix 18
AB9
A
551 559Right-handed alpha
Helix 19
AC1
A
573 580Right-handed alpha
Helix 20
AC2
A
588 597Right-handed alpha
Helix 21
AC3
A
603 620Right-handed alpha
Helix 22
AC4
A
637 643Right-handed alpha
Helix 23
AC5
A
652 661Right-handed alpha
Helix 24
AC6
A
662 666Right-handed 310
Helix 25
AC7
A
689 692Right-handed 310
Helix 26
AC8
A
693 722Right-handed alpha
Helix 27
AC9
A
722 755Right-handed alpha
Helix 28
AD1
A
763 773Right-handed alpha
Helix 29
AD2
A
773 800Right-handed alpha
Helix 30
AD3
A
801 827Right-handed alpha
Helix 31
AD4
A
837 843Right-handed alpha
Helix 32
AD5
A
856 858Right-handed 310
Helix 33
AD6
A
859 871Right-handed alpha
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There are 9 sheets in PDB entry 5BQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
156 159parallel
Strand 3
A
43 46parallel
Strand 4
A
34 40anti-parallel
Strand 5
A
19 23anti-parallel
Strand 6
A
136 142anti-parallel
Strand 7
A
145 152anti-parallel
Strand 8
A
522 523anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
309 311parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 220first strand
Strand 2
A
198 203anti-parallel
Strand 3
A
380 384anti-parallel
Strand 4
A
422 423anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
265 266anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
340 341anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 464first strand
Strand 2
A
433 438anti-parallel
Strand 3
A
543 547parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 486first strand
Strand 2
A
680 681parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 571first strand
Strand 2
A
583 585parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 624first strand
Strand 2
A
633 634anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il