Analysis of interatomic Contacts of Structural Units in PDB entry:
5BQO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BQO entry

There are 6 chains in PDB entry 5BQO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	ARG 178
B	VAL 2	ARG 178
C	VAL 2	ARG 178
D	VAL 2	ARG 178
E	GLU 3	LYS 179
F	MET 1	ILE 177

There are 32 helices in PDB entry 5BQO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	26	Right-handed alpha
Helix 2	AA2	A	40	52	Right-handed alpha
Helix 3	AA3	A	99	111	Right-handed alpha
Helix 4	AA4	A	145	147	Right-handed 310
Helix 5	AA5	A	148	154	Right-handed alpha
Helix 6	AA6	A	163	176	Right-handed alpha
Helix 7	AA7	B	8	26	Right-handed alpha
Helix 8	AA8	B	40	52	Right-handed alpha
Helix 9	AA9	B	99	111	Right-handed alpha
Helix 10	AB1	B	148	156	Right-handed alpha
Helix 11	AB2	B	163	176	Right-handed alpha
Helix 12	AB3	C	8	26	Right-handed alpha
Helix 13	AB4	C	40	52	Right-handed alpha
Helix 14	AB5	C	99	110	Right-handed alpha
Helix 15	AB6	C	111	113	Right-handed 310
Helix 16	AB7	C	148	156	Right-handed alpha
Helix 17	AB8	C	163	176	Right-handed alpha
Helix 18	AB9	D	8	26	Right-handed alpha
Helix 19	AC1	D	40	51	Right-handed alpha
Helix 20	AC2	D	99	111	Right-handed alpha
Helix 21	AC3	D	148	156	Right-handed alpha
Helix 22	AC4	D	163	175	Right-handed alpha
Helix 23	AC5	E	8	26	Right-handed alpha
Helix 24	AC6	E	40	51	Right-handed alpha
Helix 25	AC7	E	99	111	Right-handed alpha
Helix 26	AC8	E	148	156	Right-handed alpha
Helix 27	AC9	E	163	178	Right-handed alpha
Helix 28	AD1	F	8	26	Right-handed alpha
Helix 29	AD2	F	40	51	Right-handed alpha
Helix 30	AD3	F	99	111	Right-handed alpha
Helix 31	AD4	F	148	156	Right-handed alpha
Helix 32	AD5	F	163	176	Right-handed alpha

There are 12 sheets in PDB entry 5BQO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	142	143	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	80	first strand
Strand 2	A	56	63	anti-parallel
Strand 3	A	32	37	parallel
Strand 4	A	88	96	parallel
Strand 5	A	116	124	parallel
Strand 6	A	134	138	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	142	143	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	80	first strand
Strand 2	B	56	62	anti-parallel
Strand 3	B	32	37	parallel
Strand 4	B	88	96	parallel
Strand 5	B	116	124	parallel
Strand 6	B	134	138	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	142	143	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	80	first strand
Strand 2	C	56	62	anti-parallel
Strand 3	C	32	37	parallel
Strand 4	C	88	96	parallel
Strand 5	C	116	124	parallel
Strand 6	C	134	138	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	142	143	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	80	first strand
Strand 2	D	56	62	anti-parallel
Strand 3	D	32	37	parallel
Strand 4	D	88	96	parallel
Strand 5	D	116	124	parallel
Strand 6	D	134	138	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	142	143	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	80	first strand
Strand 2	E	56	62	anti-parallel
Strand 3	E	32	37	parallel
Strand 4	E	88	96	parallel
Strand 5	E	116	124	parallel
Strand 6	E	134	138	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	142	143	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	80	first strand
Strand 2	F	56	62	anti-parallel
Strand 3	F	32	37	parallel
Strand 4	F	88	96	parallel
Strand 5	F	116	124	parallel
Strand 6	F	134	138	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BQO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BQO