Analysis of interatomic Contacts of Structural Units in PDB entry:
5BQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BQS entry

There are 2 chains in PDB entry 5BQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ILE 324
B
 ALA 2ILE 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5BQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 24Right-handed alpha
Helix 2
AA2
A
30 39Right-handed alpha
Helix 3
AA3
A
50 67Right-handed alpha
Helix 4
AA4
A
69 73Right-handed 310
Helix 5
AA5
A
89 99Right-handed alpha
Helix 6
AA6
A
110 112Right-handed 310
Helix 7
AA7
A
113 128Right-handed alpha
Helix 8
AA8
A
143 145Right-handed 310
Helix 9
AA9
A
150 155Right-handed alpha
Helix 10
AB1
A
183 187Right-handed 310
Helix 11
AB2
A
213 223Right-handed alpha
Helix 12
AB3
A
223 236Right-handed alpha
Helix 13
AB4
A
239 243Right-handed 310
Helix 14
AB5
A
252 264Right-handed alpha
Helix 15
AB6
A
266 270Right-handed 310
Helix 16
AB7
A
273 278Right-handed alpha
Helix 17
AB8
A
280 282Right-handed 310
Helix 18
AB9
A
283 295Right-handed alpha
Helix 19
AC1
B
20 25Right-handed alpha
Helix 20
AC2
B
30 39Right-handed alpha
Helix 21
AC3
B
50 67Right-handed alpha
Helix 22
AC4
B
69 73Right-handed 310
Helix 23
AC5
B
89 99Right-handed alpha
Helix 24
AC6
B
110 112Right-handed 310
Helix 25
AC7
B
113 128Right-handed alpha
Helix 26
AC8
B
143 145Right-handed 310
Helix 27
AC9
B
150 155Right-handed alpha
Helix 28
AD1
B
183 187Right-handed 310
Helix 29
AD2
B
213 223Right-handed alpha
Helix 30
AD3
B
223 236Right-handed alpha
Helix 31
AD4
B
239 243Right-handed 310
Helix 32
AD5
B
252 264Right-handed alpha
Helix 33
AD6
B
266 270Right-handed 310
Helix 34
AD7
B
273 278Right-handed alpha
Helix 35
AD8
B
280 282Right-handed 310
Helix 36
AD9
B
283 295Right-handed alpha
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There are 7 sheets in PDB entry 5BQS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 12first strand
Strand 2
A
159 169anti-parallel
Strand 3
A
133 141anti-parallel
Strand 4
A
75 79parallel
Strand 5
A
104 109parallel
Strand 6
B
104 109anti-parallel
Strand 7
B
75 79parallel
Strand 8
B
133 141parallel
Strand 9
B
159 169anti-parallel
Strand 10
B
3 12anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
42 44anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 181first strand
Strand 2
A
316 324anti-parallel
Strand 3
A
304 312anti-parallel
Strand 4
A
245 248parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
211 212anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
B
42 44anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 181first strand
Strand 2
B
316 324anti-parallel
Strand 3
B
304 312anti-parallel
Strand 4
B
245 248parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 190first strand
Strand 2
B
211 212anti-parallel
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