Analysis of interatomic Contacts of Structural Units in PDB entry:
5BR1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BR1 entry

There is 1 chain in PDB entry 5BR1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 27GLU 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5BR1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 56Right-handed alpha
Helix 2
AA2
A
68 83Right-handed alpha
Helix 3
AA3
A
97 107Right-handed alpha
Helix 4
AA4
A
130 151Right-handed alpha
Helix 5
AA5
A
166 181Right-handed alpha
Helix 6
AA6
A
193 196Right-handed 310
Helix 7
AA7
A
197 212Right-handed alpha
Helix 8
AA8
A
222 236Right-handed alpha
Helix 9
AA9
A
251 260Right-handed alpha
Helix 10
AB1
A
270 281Right-handed alpha
Helix 11
AB2
A
281 287Right-handed alpha
Helix 12
AB3
A
331 335Right-handed 310
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There are 2 sheets in PDB entry 5BR1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
29 34parallel
Strand 3
A
86 89parallel
Strand 4
A
111 114parallel
Strand 5
A
125 129parallel
Strand 6
A
311 316parallel
Strand 7
A
301 308anti-parallel
Strand 8
A
294 298anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 190first strand
Strand 2
A
155 160parallel
Strand 3
A
217 220parallel
Strand 4
A
244 247parallel
Strand 5
A
265 268parallel
Strand 6
A
319 321anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il