Analysis of interatomic Contacts of Structural Units in PDB entry:
5BR4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BR4 entry

There are 2 chains in PDB entry 5BR4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 385
B
 MET 2GLU 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5BR4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 20Right-handed 310
Helix 2
AA2
A
21 30Right-handed alpha
Helix 3
AA3
A
40 45Right-handed alpha
Helix 4
AA4
A
46 58Right-handed alpha
Helix 5
AA5
A
73 87Right-handed alpha
Helix 6
AA6
A
97 113Right-handed alpha
Helix 7
AA7
A
114 117Right-handed 310
Helix 8
AA8
A
119 123Right-handed 310
Helix 9
AA9
A
168 171Right-handed 310
Helix 10
AB1
A
178 182Right-handed 310
Helix 11
AB2
A
186 207Right-handed alpha
Helix 12
AB3
A
211 234Right-handed alpha
Helix 13
AB4
A
236 258Right-handed alpha
Helix 14
AB5
A
260 274Right-handed alpha
Helix 15
AB6
A
276 293Right-handed alpha
Helix 16
AB7
A
294 296Right-handed 310
Helix 17
AB8
A
298 307Right-handed alpha
Helix 18
AB9
A
315 335Right-handed alpha
Helix 19
AC1
A
339 344Right-handed 310
Helix 20
AC2
A
346 348Right-handed 310
Helix 21
AC3
A
349 360Right-handed alpha
Helix 22
AC4
A
361 366Right-handed 310
Helix 23
AC5
A
371 384Right-handed alpha
Helix 24
AC6
B
17 20Right-handed 310
Helix 25
AC7
B
21 30Right-handed alpha
Helix 26
AC8
B
39 45Right-handed alpha
Helix 27
AC9
B
46 59Right-handed alpha
Helix 28
AD1
B
73 87Right-handed alpha
Helix 29
AD2
B
97 113Right-handed alpha
Helix 30
AD3
B
114 117Right-handed 310
Helix 31
AD4
B
119 123Right-handed 310
Helix 32
AD5
B
168 171Right-handed 310
Helix 33
AD6
B
178 182Right-handed 310
Helix 34
AD7
B
186 207Right-handed alpha
Helix 35
AD8
B
211 235Right-handed alpha
Helix 36
AD9
B
236 258Right-handed alpha
Helix 37
AE1
B
260 274Right-handed alpha
Helix 38
AE2
B
276 293Right-handed alpha
Helix 39
AE3
B
294 296Right-handed 310
Helix 40
AE4
B
298 307Right-handed alpha
Helix 41
AE5
B
315 335Right-handed alpha
Helix 42
AE6
B
339 344Right-handed 310
Helix 43
AE7
B
346 348Right-handed 310
Helix 44
AE8
B
349 360Right-handed alpha
Helix 45
AE9
B
361 366Right-handed 310
Helix 46
AF1
B
371 384Right-handed alpha
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There are 4 sheets in PDB entry 5BR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
174 177parallel
Strand 3
A
135 139parallel
Strand 4
A
91 96parallel
Strand 5
A
33 39parallel
Strand 6
A
61 68parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
161 166parallel
Strand 3
A
151 156anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
174 177parallel
Strand 3
B
135 139parallel
Strand 4
B
91 96parallel
Strand 5
B
33 37parallel
Strand 6
B
61 65parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
161 166parallel
Strand 3
B
151 156anti-parallel
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