Analysis of interatomic Contacts of Structural Units in PDB entry:
5BR9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BR9 entry

There are 5 chains in PDB entry 5BR9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	ARG 216
B	MET 1	ARG 216
C	HIS -1	ARG 216
D	MET 1	TYR 214
E	MET 1	ARG 216

There are 39 helices in PDB entry 5BR9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	51	Right-handed alpha
Helix 2	AA2	A	53	57	Right-handed 310
Helix 3	AA3	A	68	87	Right-handed alpha
Helix 4	AA4	A	94	108	Right-handed alpha
Helix 5	AA5	A	145	149	Right-handed 310
Helix 6	AA6	A	165	173	Right-handed 310
Helix 7	AA7	A	187	201	Right-handed alpha
Helix 8	AA8	B	34	51	Right-handed alpha
Helix 9	AA9	B	53	57	Right-handed 310
Helix 10	AB1	B	68	87	Right-handed alpha
Helix 11	AB2	B	94	108	Right-handed alpha
Helix 12	AB3	B	145	149	Right-handed 310
Helix 13	AB4	B	165	173	Right-handed 310
Helix 14	AB5	B	187	201	Right-handed alpha
Helix 15	AB6	B	206	210	Right-handed 310
Helix 16	AB7	C	34	51	Right-handed alpha
Helix 17	AB8	C	53	57	Right-handed 310
Helix 18	AB9	C	68	87	Right-handed alpha
Helix 19	AC1	C	94	108	Right-handed alpha
Helix 20	AC2	C	145	149	Right-handed 310
Helix 21	AC3	C	165	173	Right-handed 310
Helix 22	AC4	C	187	201	Right-handed alpha
Helix 23	AC5	C	206	210	Right-handed 310
Helix 24	AC6	D	38	51	Right-handed alpha
Helix 25	AC7	D	53	57	Right-handed 310
Helix 26	AC8	D	68	87	Right-handed alpha
Helix 27	AC9	D	94	108	Right-handed alpha
Helix 28	AD1	D	145	149	Right-handed 310
Helix 29	AD2	D	165	173	Right-handed 310
Helix 30	AD3	D	187	201	Right-handed alpha
Helix 31	AD4	D	206	210	Right-handed 310
Helix 32	AD5	E	35	51	Right-handed alpha
Helix 33	AD6	E	53	57	Right-handed 310
Helix 34	AD7	E	68	87	Right-handed alpha
Helix 35	AD8	E	95	108	Right-handed alpha
Helix 36	AD9	E	145	149	Right-handed 310
Helix 37	AE1	E	165	173	Right-handed 310
Helix 38	AE2	E	187	201	Right-handed alpha
Helix 39	AE3	E	206	210	Right-handed 310

There are 13 sheets in PDB entry 5BR9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	30	first strand
Strand 2	A	13	20	anti-parallel
Strand 3	A	4	8	anti-parallel
Strand 4	A	59	63	parallel
Strand 5	A	90	93	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	144	first strand
Strand 2	A	123	131	anti-parallel
Strand 3	A	111	117	anti-parallel
Strand 4	A	160	163	parallel
Strand 5	A	179	181	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	30	first strand
Strand 2	B	13	20	anti-parallel
Strand 3	B	4	8	anti-parallel
Strand 4	B	59	63	parallel
Strand 5	B	90	93	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	137	first strand
Strand 2	B	123	131	anti-parallel
Strand 3	B	142	144	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	137	first strand
Strand 2	B	123	131	anti-parallel
Strand 3	B	111	117	anti-parallel
Strand 4	B	161	163	parallel
Strand 5	B	179	181	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	30	first strand
Strand 2	C	13	20	anti-parallel
Strand 3	C	4	8	anti-parallel
Strand 4	C	59	63	parallel
Strand 5	C	90	93	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	137	first strand
Strand 2	C	123	131	anti-parallel
Strand 3	C	142	144	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	137	first strand
Strand 2	C	123	131	anti-parallel
Strand 3	C	111	117	anti-parallel
Strand 4	C	161	163	parallel
Strand 5	C	179	181	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	30	first strand
Strand 2	D	13	20	anti-parallel
Strand 3	D	4	8	anti-parallel
Strand 4	D	59	63	parallel
Strand 5	D	90	93	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	144	first strand
Strand 2	D	122	131	anti-parallel
Strand 3	D	111	118	anti-parallel
Strand 4	D	161	163	parallel
Strand 5	D	179	181	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	30	first strand
Strand 2	E	13	20	anti-parallel
Strand 3	E	4	8	anti-parallel
Strand 4	E	59	65	parallel
Strand 5	E	90	94	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	137	first strand
Strand 2	E	123	131	anti-parallel
Strand 3	E	142	144	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	137	first strand
Strand 2	E	123	131	anti-parallel
Strand 3	E	111	117	anti-parallel
Strand 4	E	161	163	parallel
Strand 5	E	179	181	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BR9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BR9