Analysis of interatomic Contacts of Structural Units in PDB entry:
5BRA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BRA entry

There is 1 chain in PDB entry 5BRA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 27ASP 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5BRA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 72Right-handed alpha
Helix 2
AA2
A
84 99Right-handed alpha
Helix 3
AA3
A
109 123Right-handed alpha
Helix 4
AA4
A
146 163Right-handed alpha
Helix 5
AA5
A
177 195Right-handed alpha
Helix 6
AA6
A
210 223Right-handed alpha
Helix 7
AA7
A
236 248Right-handed alpha
Helix 8
AA8
A
262 272Right-handed alpha
Helix 9
AA9
A
282 299Right-handed alpha
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There are 3 sheets in PDB entry 5BRA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 78first strand
Strand 2
A
44 48parallel
Strand 3
A
102 105parallel
Strand 4
A
126 130parallel
Strand 5
A
140 143parallel
Strand 6
A
329 331parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
167 172parallel
Strand 3
A
205 206parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
167 172parallel
Strand 3
A
230 233parallel
Strand 4
A
256 260parallel
Strand 5
A
277 280parallel
Strand 6
A
336 338anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il