Analysis of interatomic Contacts of Structural Units in PDB entry:
5BRL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BRL entry

There are 2 chains in PDB entry 5BRL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13ARG 222
B
 ARG 13ARG 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5BRL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 39Right-handed alpha
Helix 2
AA2
A
40 45Right-handed 310
Helix 3
AA3
A
78 87Right-handed alpha
Helix 4
AA4
A
89 96Right-handed alpha
Helix 5
AA5
A
198 222Right-handed alpha
Helix 6
AA6
B
19 40Right-handed alpha
Helix 7
AA7
B
41 45Right-handed 310
Helix 8
AA8
B
78 87Right-handed alpha
Helix 9
AA9
B
89 96Right-handed alpha
Helix 10
AB1
B
198 221Right-handed alpha
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There are 4 sheets in PDB entry 5BRL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
55 60anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
179 189anti-parallel
Strand 5
A
169 176anti-parallel
Strand 6
A
144 151anti-parallel
Strand 7
A
131 141anti-parallel
Strand 8
A
112 119anti-parallel
Strand 9
A
99 109anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
191 192anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 50first strand
Strand 2
B
55 60anti-parallel
Strand 3
B
67 75anti-parallel
Strand 4
B
179 189anti-parallel
Strand 5
B
169 176anti-parallel
Strand 6
B
144 151anti-parallel
Strand 7
B
130 141anti-parallel
Strand 8
B
112 119anti-parallel
Strand 9
B
99 109anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
191 192anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il