Analysis of interatomic Contacts of Structural Units in PDB entry:
5BRQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BRQ entry

There are 4 chains in PDB entry 5BRQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 6	LYS 560
B	ASN 6	LYS 560
C	ASN 6	LYS 560
D	ASN 6	LYS 560

There are114 helices in PDB entry 5BRQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	22	Right-handed 310
Helix 2	AA2	A	32	39	Right-handed alpha
Helix 3	AA3	A	39	46	Right-handed alpha
Helix 4	AA4	A	76	79	Right-handed 310
Helix 5	AA5	A	80	94	Right-handed alpha
Helix 6	AA6	A	111	119	Right-handed alpha
Helix 7	AA7	A	125	129	Right-handed 310
Helix 8	AA8	A	178	196	Right-handed alpha
Helix 9	AA9	A	204	208	Right-handed 310
Helix 10	AB1	A	222	226	Right-handed 310
Helix 11	AB2	A	231	243	Right-handed alpha
Helix 12	AB3	A	244	247	Right-handed 310
Helix 13	AB4	A	259	268	Right-handed alpha
Helix 14	AB5	A	269	272	Right-handed 310
Helix 15	AB6	A	280	285	Right-handed 310
Helix 16	AB7	A	287	291	Right-handed 310
Helix 17	AB8	A	299	318	Right-handed alpha
Helix 18	AB9	A	332	337	Right-handed alpha
Helix 19	AC1	A	343	357	Right-handed alpha
Helix 20	AC2	A	367	371	Right-handed 310
Helix 21	AC3	A	379	383	Right-handed 310
Helix 22	AC4	A	385	398	Right-handed alpha
Helix 23	AC5	A	401	413	Right-handed alpha
Helix 24	AC6	A	426	431	Right-handed 310
Helix 25	AC7	A	441	446	Right-handed 310
Helix 26	AC8	A	448	454	Right-handed alpha
Helix 27	AC9	A	458	473	Right-handed alpha
Helix 28	AD1	A	474	479	Right-handed alpha
Helix 29	AD2	B	7	12	Right-handed 310
Helix 30	AD3	B	18	22	Right-handed 310
Helix 31	AD4	B	32	39	Right-handed alpha
Helix 32	AD5	B	39	46	Right-handed alpha
Helix 33	AD6	B	76	79	Right-handed 310
Helix 34	AD7	B	80	94	Right-handed alpha
Helix 35	AD8	B	111	119	Right-handed alpha
Helix 36	AD9	B	125	129	Right-handed 310
Helix 37	AE1	B	178	196	Right-handed alpha
Helix 38	AE2	B	204	208	Right-handed 310
Helix 39	AE3	B	222	226	Right-handed 310
Helix 40	AE4	B	231	243	Right-handed alpha
Helix 41	AE5	B	244	247	Right-handed 310
Helix 42	AE6	B	259	268	Right-handed alpha
Helix 43	AE7	B	269	272	Right-handed 310
Helix 44	AE8	B	280	285	Right-handed 310
Helix 45	AE9	B	287	291	Right-handed 310
Helix 46	AF1	B	299	318	Right-handed alpha
Helix 47	AF2	B	332	337	Right-handed alpha
Helix 48	AF3	B	343	357	Right-handed alpha
Helix 49	AF4	B	367	371	Right-handed 310
Helix 50	AF5	B	379	383	Right-handed 310
Helix 51	AF6	B	385	398	Right-handed alpha
Helix 52	AF7	B	401	413	Right-handed alpha
Helix 53	AF8	B	426	431	Right-handed 310
Helix 54	AF9	B	441	446	Right-handed 310
Helix 55	AG1	B	448	454	Right-handed alpha
Helix 56	AG2	B	458	473	Right-handed alpha
Helix 57	AG3	B	474	479	Right-handed alpha
Helix 58	AG4	C	7	11	Right-handed 310
Helix 59	AG5	C	18	22	Right-handed 310
Helix 60	AG6	C	32	39	Right-handed alpha
Helix 61	AG7	C	39	46	Right-handed alpha
Helix 62	AG8	C	76	79	Right-handed 310
Helix 63	AG9	C	80	93	Right-handed alpha
Helix 64	AH1	C	111	119	Right-handed alpha
Helix 65	AH2	C	125	129	Right-handed 310
Helix 66	AH3	C	178	196	Right-handed alpha
Helix 67	AH4	C	204	208	Right-handed 310
Helix 68	AH5	C	222	226	Right-handed 310
Helix 69	AH6	C	231	243	Right-handed alpha
Helix 70	AH7	C	244	247	Right-handed 310
Helix 71	AH8	C	259	268	Right-handed alpha
Helix 72	AH9	C	269	272	Right-handed 310
Helix 73	AI1	C	280	285	Right-handed 310
Helix 74	AI2	C	287	291	Right-handed 310
Helix 75	AI3	C	299	318	Right-handed alpha
Helix 76	AI4	C	332	337	Right-handed alpha
Helix 77	AI5	C	343	357	Right-handed alpha
Helix 78	AI6	C	367	371	Right-handed 310
Helix 79	AI7	C	379	383	Right-handed 310
Helix 80	AI8	C	385	398	Right-handed alpha
Helix 81	AI9	C	401	413	Right-handed alpha
Helix 82	AJ1	C	426	431	Right-handed 310
Helix 83	AJ2	C	441	446	Right-handed 310
Helix 84	AJ3	C	448	454	Right-handed alpha
Helix 85	AJ4	C	458	473	Right-handed alpha
Helix 86	AJ5	C	474	479	Right-handed alpha
Helix 87	AJ6	D	7	11	Right-handed 310
Helix 88	AJ7	D	18	22	Right-handed 310
Helix 89	AJ8	D	32	39	Right-handed alpha
Helix 90	AJ9	D	39	46	Right-handed alpha
Helix 91	AK1	D	80	94	Right-handed alpha
Helix 92	AK2	D	111	119	Right-handed alpha
Helix 93	AK3	D	125	129	Right-handed 310
Helix 94	AK4	D	178	196	Right-handed alpha
Helix 95	AK5	D	204	208	Right-handed 310
Helix 96	AK6	D	222	226	Right-handed 310
Helix 97	AK7	D	231	243	Right-handed alpha
Helix 98	AK8	D	244	247	Right-handed 310
Helix 99	AK9	D	259	268	Right-handed alpha
Helix 100	AL1	D	269	272	Right-handed 310
Helix 101	AL2	D	280	285	Right-handed 310
Helix 102	AL3	D	287	291	Right-handed 310
Helix 103	AL4	D	299	318	Right-handed alpha
Helix 104	AL5	D	332	337	Right-handed alpha
Helix 105	AL6	D	343	357	Right-handed alpha
Helix 106	AL7	D	367	371	Right-handed 310
Helix 107	AL8	D	379	383	Right-handed 310
Helix 108	AL9	D	385	398	Right-handed alpha
Helix 109	AM1	D	401	413	Right-handed alpha
Helix 110	AM2	D	426	431	Right-handed 310
Helix 111	AM3	D	441	446	Right-handed 310
Helix 112	AM4	D	448	454	Right-handed alpha
Helix 113	AM5	D	458	473	Right-handed alpha
Helix 114	AM6	D	474	479	Right-handed alpha

There are 24 sheets in PDB entry 5BRQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	250	254	parallel
Strand 3	A	199	202	parallel
Strand 4	A	97	102	parallel
Strand 5	A	50	53	parallel
Strand 6	A	14	17	parallel
Strand 7	A	361	365	parallel
Strand 8	A	322	323	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	70	74	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	108	first strand
Strand 2	A	171	173	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	161	164	anti-parallel
Strand 3	A	153	156	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	484	first strand
Strand 2	A	491	497	anti-parallel
Strand 3	A	501	508	anti-parallel
Strand 4	A	553	559	anti-parallel
Strand 5	A	528	534	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	517	first strand
Strand 2	A	545	548	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	250	254	parallel
Strand 3	B	199	202	parallel
Strand 4	B	97	102	parallel
Strand 5	B	50	53	parallel
Strand 6	B	14	17	parallel
Strand 7	B	361	365	parallel
Strand 8	B	322	323	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	70	74	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	108	first strand
Strand 2	B	171	173	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	161	164	anti-parallel
Strand 3	B	153	156	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	484	first strand
Strand 2	B	491	498	anti-parallel
Strand 3	B	501	508	anti-parallel
Strand 4	B	553	559	anti-parallel
Strand 5	B	528	534	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	517	first strand
Strand 2	B	545	548	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	278	first strand
Strand 2	C	250	254	parallel
Strand 3	C	199	202	parallel
Strand 4	C	97	102	parallel
Strand 5	C	50	53	parallel
Strand 6	C	14	17	parallel
Strand 7	C	361	365	parallel
Strand 8	C	322	323	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	58	first strand
Strand 2	C	70	74	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	108	first strand
Strand 2	C	171	173	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	161	164	anti-parallel
Strand 3	C	153	156	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	482	484	first strand
Strand 2	C	491	497	anti-parallel
Strand 3	C	501	508	anti-parallel
Strand 4	C	553	559	anti-parallel
Strand 5	C	528	534	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	517	first strand
Strand 2	C	545	548	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	278	first strand
Strand 2	D	250	254	parallel
Strand 3	D	199	202	parallel
Strand 4	D	97	102	parallel
Strand 5	D	50	53	parallel
Strand 6	D	14	17	parallel
Strand 7	D	361	365	parallel
Strand 8	D	322	323	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	58	first strand
Strand 2	D	70	74	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	108	first strand
Strand 2	D	171	173	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	133	first strand
Strand 2	D	161	164	anti-parallel
Strand 3	D	153	155	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	482	484	first strand
Strand 2	D	491	497	anti-parallel
Strand 3	D	501	508	anti-parallel
Strand 4	D	553	559	anti-parallel
Strand 5	D	528	534	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	517	first strand
Strand 2	D	545	548	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BRQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BRQ