Analysis of interatomic Contacts of Structural Units in PDB entry:
5BRR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BRR entry

There are 2 chains in PDB entry 5BRR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
 VAL 8PRO 379
E
 ILE 16ARG 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5BRR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
I
8 27Right-handed alpha
Helix 2
AA2
I
35 49Right-handed alpha
Helix 3
AA3
I
51 63Right-handed alpha
Helix 4
AA4
I
70 83Right-handed alpha
Helix 5
AA5
I
108 118Right-handed alpha
Helix 6
AA6
I
129 144Right-handed alpha
Helix 7
AA7
I
151 157Right-handed 310
Helix 8
AA8
I
229 231Right-handed 310
Helix 9
AA9
I
255 266Right-handed alpha
Helix 10
AB1
I
286 293Right-handed alpha
Helix 11
AB2
I
296 300Right-handed 310
Helix 12
AB3
E
23 27Right-handed 310
Helix 13
AB4
E
55 60Right-handed 310
Helix 14
AB5
E
60 62Right-handed 310
Helix 15
AB6
E
164 168Right-handed 310
Helix 16
AB7
E
169 172Right-handed 310
Helix 17
AB8
E
234 241Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5BRR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
32 34first strand
Strand 2
I
370 376anti-parallel
Strand 3
I
358 364anti-parallel
Strand 4
I
233 240anti-parallel
Strand 5
I
219 227anti-parallel
Strand 6
I
197 215anti-parallel
Strand 7
I
184 189anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
32 34first strand
Strand 2
I
370 376anti-parallel
Strand 3
I
358 364anti-parallel
Strand 4
I
233 240anti-parallel
Strand 5
I
219 227anti-parallel
Strand 6
I
197 215anti-parallel
Strand 7
I
267 276anti-parallel
Strand 8
I
351 353parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
122 124first strand
Strand 2
I
95 100parallel
Strand 3
I
163 172anti-parallel
Strand 4
I
317 328parallel
Strand 5
I
278 285anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 21first strand
Strand 2
E
156 162anti-parallel
Strand 3
E
180 184anti-parallel
Strand 4
E
226 230anti-parallel
Strand 5
E
206 215anti-parallel
Strand 6
E
198 203anti-parallel
Strand 7
E
135 140anti-parallel
Strand 8
E
156 162anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
30 36first strand
Strand 2
E
38 48anti-parallel
Strand 3
E
51 54anti-parallel
Strand 4
E
104 109anti-parallel
Strand 5
E
81 90anti-parallel
Strand 6
E
64 68anti-parallel
Strand 7
E
30 36anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il