Analysis of interatomic Contacts of Structural Units in PDB entry:
5BS5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BS5 entry

There are 2 chains in PDB entry 5BS5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 312	GLN 756
B	GLN 313	ILE 548

There are 32 helices in PDB entry 5BS5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	333	346	Right-handed alpha
Helix 2	AA2	A	359	372	Right-handed alpha
Helix 3	AA3	A	406	418	Right-handed alpha
Helix 4	AA4	A	431	435	Right-handed 310
Helix 5	AA5	A	437	447	Right-handed alpha
Helix 6	AA6	A	481	493	Right-handed alpha
Helix 7	AA7	A	509	518	Right-handed alpha
Helix 8	AA8	A	547	560	Right-handed alpha
Helix 9	AA9	A	578	587	Right-handed alpha
Helix 10	AB1	A	621	625	Right-handed 310
Helix 11	AB2	A	631	642	Right-handed alpha
Helix 12	AB3	A	660	672	Right-handed alpha
Helix 13	AB4	A	708	718	Right-handed alpha
Helix 14	AB5	A	719	722	Right-handed 310
Helix 15	AB6	A	733	738	Right-handed alpha
Helix 16	AB7	A	740	749	Right-handed alpha
Helix 17	AB8	B	333	346	Right-handed alpha
Helix 18	AB9	B	359	372	Right-handed alpha
Helix 19	AC1	B	406	418	Right-handed alpha
Helix 20	AC2	B	431	435	Right-handed 310
Helix 21	AC3	B	437	447	Right-handed alpha
Helix 22	AC4	B	481	493	Right-handed alpha
Helix 23	AC5	B	509	518	Right-handed alpha
Helix 24	AC6	B	547	560	Right-handed alpha
Helix 25	AC7	B	578	587	Right-handed alpha
Helix 26	AC8	B	621	625	Right-handed 310
Helix 27	AC9	B	631	642	Right-handed alpha
Helix 28	AD1	B	660	672	Right-handed alpha
Helix 29	AD2	B	708	718	Right-handed alpha
Helix 30	AD3	B	719	722	Right-handed 310
Helix 31	AD4	B	733	738	Right-handed alpha
Helix 32	AD5	B	740	749	Right-handed alpha

There are 12 sheets in PDB entry 5BS5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	704	first strand
Strand 2	A	726	729	parallel
Strand 3	A	314	317	anti-parallel
Strand 4	A	753	755	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	328	first strand
Strand 2	A	565	572	parallel
Strand 3	A	602	610	anti-parallel
Strand 4	A	590	599	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	380	first strand
Strand 2	A	383	387	anti-parallel
Strand 3	A	350	354	anti-parallel
Strand 4	A	541	543	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	A	424	427	parallel
Strand 3	A	459	465	anti-parallel
Strand 4	A	450	454	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	476	first strand
Strand 2	A	498	502	parallel
Strand 3	A	528	532	anti-parallel
Strand 4	A	523	525	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	648	first strand
Strand 2	A	682	686	anti-parallel
Strand 3	A	676	679	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	704	first strand
Strand 2	B	726	729	parallel
Strand 3	B	314	317	anti-parallel
Strand 4	B	753	755	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	565	572	parallel
Strand 3	B	602	610	anti-parallel
Strand 4	B	590	599	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	380	first strand
Strand 2	B	383	387	anti-parallel
Strand 3	B	350	354	anti-parallel
Strand 4	B	541	543	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	402	first strand
Strand 2	B	424	427	parallel
Strand 3	B	459	465	anti-parallel
Strand 4	B	450	454	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	476	first strand
Strand 2	B	498	502	parallel
Strand 3	B	528	532	anti-parallel
Strand 4	B	523	525	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	643	648	first strand
Strand 2	B	682	688	anti-parallel
Strand 3	B	676	679	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BS5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BS5