Analysis of interatomic Contacts of Structural Units in PDB entry:
5BS7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BS7 entry

There are 6 chains in PDB entry 5BS7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 60ARG 134
B
 LEU 60ALA 135
C
 GLN 27ARG 95
D
 ILE 26GLN 93
E
 GLU 606GLN 675
F
 ILE 605ASP 626
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 5BS7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 77Right-handed alpha
Helix 2
AA2
A
85 114Right-handed alpha
Helix 3
AA3
A
120 132Right-handed alpha
Helix 4
AA4
B
63 78Right-handed alpha
Helix 5
AA5
B
85 114Right-handed alpha
Helix 6
AA6
B
120 132Right-handed alpha
Helix 7
AA7
C
30 42Right-handed alpha
Helix 8
AA8
C
49 75Right-handed alpha
Helix 9
AA9
C
82 90Right-handed alpha
Helix 10
AB1
D
30 42Right-handed alpha
Helix 11
AB2
D
49 75Right-handed alpha
Helix 12
AB3
D
82 93Right-handed alpha
Helix 13
AB4
E
613 624Right-handed alpha
Helix 14
AB5
E
635 640Right-handed alpha
Helix 15
AB6
E
644 675Right-handed alpha
Helix 16
AB7
F
615 624Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5BS7.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
D
45 46parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il