Analysis of interatomic Contacts of Structural Units in PDB entry:
5BSE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BSE entry

There are 5 chains in PDB entry 5BSE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 3	SER 274
B	ILE 3	SER 274
C	ILE 3	SER 274
D	PRO 5	SER 274
E	ILE 3	ARG 256

There are162 helices in PDB entry 5BSE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	32	Right-handed alpha
Helix 2	AA2	A	36	38	Right-handed 310
Helix 3	AA3	A	47	49	Right-handed 310
Helix 4	AA4	A	50	56	Right-handed alpha
Helix 5	AA5	A	64	72	Right-handed alpha
Helix 6	AA6	A	80	92	Right-handed alpha
Helix 7	AA7	A	93	95	Right-handed 310
Helix 8	AA8	A	109	118	Right-handed alpha
Helix 9	AA9	A	128	134	Right-handed 310
Helix 10	AB1	A	147	160	Right-handed alpha
Helix 11	AB2	A	168	170	Right-handed 310
Helix 12	AB3	A	171	179	Right-handed alpha
Helix 13	AB4	A	181	200	Right-handed alpha
Helix 14	AB5	A	203	225	Right-handed alpha
Helix 15	AB6	A	228	237	Right-handed alpha
Helix 16	AB7	A	241	253	Right-handed alpha
Helix 17	AB8	A	254	273	Right-handed alpha
Helix 18	AB9	B	19	32	Right-handed alpha
Helix 19	AC1	B	36	38	Right-handed 310
Helix 20	AC2	B	47	56	Right-handed alpha
Helix 21	AC3	B	64	71	Right-handed alpha
Helix 22	AC4	B	80	92	Right-handed alpha
Helix 23	AC5	B	93	95	Right-handed 310
Helix 24	AC6	B	109	118	Right-handed alpha
Helix 25	AC7	B	128	134	Right-handed 310
Helix 26	AC8	B	147	160	Right-handed alpha
Helix 27	AC9	B	168	170	Right-handed 310
Helix 28	AD1	B	171	179	Right-handed alpha
Helix 29	AD2	B	181	200	Right-handed alpha
Helix 30	AD3	B	203	225	Right-handed alpha
Helix 31	AD4	B	228	237	Right-handed alpha
Helix 32	AD5	B	241	253	Right-handed alpha
Helix 33	AD6	B	254	273	Right-handed alpha
Helix 34	AD7	C	19	32	Right-handed alpha
Helix 35	AD8	C	36	38	Right-handed 310
Helix 36	AD9	C	47	49	Right-handed 310
Helix 37	AE1	C	50	56	Right-handed alpha
Helix 38	AE2	C	64	71	Right-handed alpha
Helix 39	AE3	C	80	92	Right-handed alpha
Helix 40	AE4	C	93	95	Right-handed 310
Helix 41	AE5	C	109	118	Right-handed alpha
Helix 42	AE6	C	128	134	Right-handed 310
Helix 43	AE7	C	147	160	Right-handed alpha
Helix 44	AE8	C	168	170	Right-handed 310
Helix 45	AE9	C	171	179	Right-handed alpha
Helix 46	AF1	C	181	200	Right-handed alpha
Helix 47	AF2	C	203	225	Right-handed alpha
Helix 48	AF3	C	228	237	Right-handed alpha
Helix 49	AF4	C	241	253	Right-handed alpha
Helix 50	AF5	C	254	273	Right-handed alpha
Helix 51	AF6	D	19	32	Right-handed alpha
Helix 52	AF7	D	36	38	Right-handed 310
Helix 53	AF8	D	47	56	Right-handed alpha
Helix 54	AF9	D	64	71	Right-handed alpha
Helix 55	AG1	D	80	92	Right-handed alpha
Helix 56	AG2	D	93	95	Right-handed 310
Helix 57	AG3	D	109	118	Right-handed alpha
Helix 58	AG4	D	128	134	Right-handed 310
Helix 59	AG5	D	147	160	Right-handed alpha
Helix 60	AG6	D	168	170	Right-handed 310
Helix 61	AG7	D	171	179	Right-handed alpha
Helix 62	AG8	D	181	200	Right-handed alpha
Helix 63	AG9	D	203	225	Right-handed alpha
Helix 64	AH1	D	228	237	Right-handed alpha
Helix 65	AH2	D	241	253	Right-handed alpha
Helix 66	AH3	D	254	273	Right-handed alpha
Helix 67	AH4	E	19	32	Right-handed alpha
Helix 68	AH5	E	36	38	Right-handed 310
Helix 69	AH6	E	47	56	Right-handed alpha
Helix 70	AH7	E	64	71	Right-handed alpha
Helix 71	AH8	E	80	92	Right-handed alpha
Helix 72	AH9	E	93	95	Right-handed 310
Helix 73	AI1	E	109	118	Right-handed alpha
Helix 74	AI2	E	128	134	Right-handed 310
Helix 75	AI3	E	147	158	Right-handed alpha
Helix 76	AI4	E	168	170	Right-handed 310
Helix 77	AI5	E	171	179	Right-handed alpha
Helix 78	AI6	E	181	200	Right-handed alpha
Helix 79	AI7	E	203	225	Right-handed alpha
Helix 80	AI8	E	228	237	Right-handed alpha
Helix 81	AI9	E	241	253	Right-handed alpha
Helix 82	AJ1	E	254	273	Right-handed alpha
Helix 83	AJ2	F	19	32	Right-handed alpha
Helix 84	AJ3	F	36	38	Right-handed 310
Helix 85	AJ4	F	47	56	Right-handed alpha
Helix 86	AJ5	F	64	71	Right-handed alpha
Helix 87	AJ6	F	80	92	Right-handed alpha
Helix 88	AJ7	F	93	95	Right-handed 310
Helix 89	AJ8	F	109	118	Right-handed alpha
Helix 90	AJ9	F	128	134	Right-handed 310
Helix 91	AK1	F	147	160	Right-handed alpha
Helix 92	AK2	F	168	170	Right-handed 310
Helix 93	AK3	F	171	179	Right-handed alpha
Helix 94	AK4	F	181	200	Right-handed alpha
Helix 95	AK5	F	203	225	Right-handed alpha
Helix 96	AK6	F	228	237	Right-handed alpha
Helix 97	AK7	F	241	253	Right-handed alpha
Helix 98	AK8	F	254	273	Right-handed alpha
Helix 99	AK9	G	19	32	Right-handed alpha
Helix 100	AL1	G	36	38	Right-handed 310
Helix 101	AL2	G	47	56	Right-handed alpha
Helix 102	AL3	G	64	72	Right-handed alpha
Helix 103	AL4	G	80	92	Right-handed alpha
Helix 104	AL5	G	93	95	Right-handed 310
Helix 105	AL6	G	109	118	Right-handed alpha
Helix 106	AL7	G	128	134	Right-handed 310
Helix 107	AL8	G	147	160	Right-handed alpha
Helix 108	AL9	G	168	170	Right-handed 310
Helix 109	AM1	G	171	179	Right-handed alpha
Helix 110	AM2	G	181	200	Right-handed alpha
Helix 111	AM3	G	203	225	Right-handed alpha
Helix 112	AM4	G	228	237	Right-handed alpha
Helix 113	AM5	G	241	253	Right-handed alpha
Helix 114	AM6	G	254	273	Right-handed alpha
Helix 115	AM7	H	19	32	Right-handed alpha
Helix 116	AM8	H	36	38	Right-handed 310
Helix 117	AM9	H	47	56	Right-handed alpha
Helix 118	AN1	H	64	71	Right-handed alpha
Helix 119	AN2	H	80	92	Right-handed alpha
Helix 120	AN3	H	93	95	Right-handed 310
Helix 121	AN4	H	109	118	Right-handed alpha
Helix 122	AN5	H	128	134	Right-handed 310
Helix 123	AN6	H	147	159	Right-handed alpha
Helix 124	AN7	H	168	170	Right-handed 310
Helix 125	AN8	H	171	179	Right-handed alpha
Helix 126	AN9	H	181	200	Right-handed alpha
Helix 127	AO1	H	203	225	Right-handed alpha
Helix 128	AO2	H	228	237	Right-handed alpha
Helix 129	AO3	H	241	253	Right-handed alpha
Helix 130	AO4	H	254	273	Right-handed alpha
Helix 131	AO5	I	19	32	Right-handed alpha
Helix 132	AO6	I	36	38	Right-handed 310
Helix 133	AO7	I	47	56	Right-handed alpha
Helix 134	AO8	I	64	71	Right-handed alpha
Helix 135	AO9	I	80	92	Right-handed alpha
Helix 136	AP1	I	93	95	Right-handed 310
Helix 137	AP2	I	109	118	Right-handed alpha
Helix 138	AP3	I	128	134	Right-handed 310
Helix 139	AP4	I	147	160	Right-handed alpha
Helix 140	AP5	I	168	170	Right-handed 310
Helix 141	AP6	I	171	179	Right-handed alpha
Helix 142	AP7	I	181	200	Right-handed alpha
Helix 143	AP8	I	203	225	Right-handed alpha
Helix 144	AP9	I	228	237	Right-handed alpha
Helix 145	AQ1	I	241	254	Right-handed alpha
Helix 146	AQ2	I	254	273	Right-handed alpha
Helix 147	AQ3	J	19	32	Right-handed alpha
Helix 148	AQ4	J	36	38	Right-handed 310
Helix 149	AQ5	J	47	56	Right-handed alpha
Helix 150	AQ6	J	64	71	Right-handed alpha
Helix 151	AQ7	J	80	92	Right-handed alpha
Helix 152	AQ8	J	93	95	Right-handed 310
Helix 153	AQ9	J	109	118	Right-handed alpha
Helix 154	AR1	J	128	134	Right-handed 310
Helix 155	AR2	J	147	159	Right-handed alpha
Helix 156	AR3	J	168	170	Right-handed 310
Helix 157	AR4	J	171	179	Right-handed alpha
Helix 158	AR5	J	181	200	Right-handed alpha
Helix 159	AR6	J	203	225	Right-handed alpha
Helix 160	AR7	J	228	237	Right-handed alpha
Helix 161	AR8	J	241	253	Right-handed alpha
Helix 162	AR9	J	254	273	Right-handed alpha

There are 10 sheets in PDB entry 5BSE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	40	43	parallel
Strand 3	A	13	16	parallel
Strand 4	A	74	77	parallel
Strand 5	A	100	103	parallel
Strand 6	A	122	126	parallel
Strand 7	A	136	142	anti-parallel
Strand 8	A	162	166	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	40	43	parallel
Strand 3	B	13	16	parallel
Strand 4	B	74	77	parallel
Strand 5	B	100	103	parallel
Strand 6	B	122	126	parallel
Strand 7	B	136	142	anti-parallel
Strand 8	B	162	166	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	40	43	parallel
Strand 3	C	13	16	parallel
Strand 4	C	74	77	parallel
Strand 5	C	100	103	parallel
Strand 6	C	122	126	parallel
Strand 7	C	136	142	anti-parallel
Strand 8	C	162	166	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	40	43	parallel
Strand 3	D	13	16	parallel
Strand 4	D	74	77	parallel
Strand 5	D	100	103	parallel
Strand 6	D	122	126	parallel
Strand 7	D	136	142	anti-parallel
Strand 8	D	162	166	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	62	first strand
Strand 2	E	40	43	parallel
Strand 3	E	13	16	parallel
Strand 4	E	74	77	parallel
Strand 5	E	100	103	parallel
Strand 6	E	122	126	parallel
Strand 7	E	136	142	anti-parallel
Strand 8	E	162	166	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	62	first strand
Strand 2	F	40	43	parallel
Strand 3	F	13	16	parallel
Strand 4	F	74	77	parallel
Strand 5	F	100	103	parallel
Strand 6	F	122	126	parallel
Strand 7	F	136	142	anti-parallel
Strand 8	F	162	166	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	62	first strand
Strand 2	G	40	43	parallel
Strand 3	G	13	16	parallel
Strand 4	G	74	77	parallel
Strand 5	G	100	103	parallel
Strand 6	G	122	126	parallel
Strand 7	G	136	142	anti-parallel
Strand 8	G	162	166	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	62	first strand
Strand 2	H	40	43	parallel
Strand 3	H	13	16	parallel
Strand 4	H	74	77	parallel
Strand 5	H	100	103	parallel
Strand 6	H	122	126	parallel
Strand 7	H	136	142	anti-parallel
Strand 8	H	162	166	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	62	first strand
Strand 2	I	40	43	parallel
Strand 3	I	13	16	parallel
Strand 4	I	74	77	parallel
Strand 5	I	100	103	parallel
Strand 6	I	122	126	parallel
Strand 7	I	136	142	anti-parallel
Strand 8	I	162	166	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	60	62	first strand
Strand 2	J	40	43	parallel
Strand 3	J	13	16	parallel
Strand 4	J	74	77	parallel
Strand 5	J	100	103	parallel
Strand 6	J	122	126	parallel
Strand 7	J	136	142	anti-parallel
Strand 8	J	162	166	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BSE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BSE