Analysis of interatomic Contacts of Structural Units in PDB entry:
5BSM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BSM entry

There are 2 chains in PDB entry 5BSM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 8	ALA 537
B	VAL 8	ALA 537

There are 48 helices in PDB entry 5BSM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	32	Right-handed alpha
Helix 2	AA2	A	34	38	Right-handed 310
Helix 3	AA3	A	55	72	Right-handed alpha
Helix 4	AA4	A	87	100	Right-handed alpha
Helix 5	AA5	A	112	124	Right-handed alpha
Helix 6	AA6	A	131	137	Right-handed 310
Helix 7	AA7	A	138	145	Right-handed alpha
Helix 8	AA8	A	162	167	Right-handed alpha
Helix 9	AA9	A	169	173	Right-handed 310
Helix 10	AB1	A	203	215	Right-handed alpha
Helix 11	AB2	A	237	244	Right-handed alpha
Helix 12	AB3	A	244	252	Right-handed alpha
Helix 13	AB4	A	262	274	Right-handed alpha
Helix 14	AB5	A	281	291	Right-handed alpha
Helix 15	AB6	A	293	297	Right-handed 310
Helix 16	AB7	A	313	323	Right-handed alpha
Helix 17	AB8	A	336	339	Right-handed 310
Helix 18	AB9	A	346	349	Right-handed 310
Helix 19	AC1	A	402	410	Right-handed alpha
Helix 20	AC2	A	437	439	Right-handed 310
Helix 21	AC3	A	448	458	Right-handed alpha
Helix 22	AC4	A	492	504	Right-handed alpha
Helix 23	AC5	A	505	509	Right-handed 310
Helix 24	AC6	A	528	537	Right-handed alpha
Helix 25	AC7	B	26	32	Right-handed alpha
Helix 26	AC8	B	34	38	Right-handed 310
Helix 27	AC9	B	55	72	Right-handed alpha
Helix 28	AD1	B	87	100	Right-handed alpha
Helix 29	AD2	B	112	123	Right-handed alpha
Helix 30	AD3	B	131	133	Right-handed 310
Helix 31	AD4	B	134	144	Right-handed alpha
Helix 32	AD5	B	162	167	Right-handed alpha
Helix 33	AD6	B	169	173	Right-handed 310
Helix 34	AD7	B	203	215	Right-handed alpha
Helix 35	AD8	B	237	244	Right-handed alpha
Helix 36	AD9	B	244	252	Right-handed alpha
Helix 37	AE1	B	262	274	Right-handed alpha
Helix 38	AE2	B	281	291	Right-handed alpha
Helix 39	AE3	B	292	297	Right-handed 310
Helix 40	AE4	B	313	322	Right-handed alpha
Helix 41	AE5	B	336	339	Right-handed 310
Helix 42	AE6	B	346	349	Right-handed 310
Helix 43	AE7	B	402	410	Right-handed alpha
Helix 44	AE8	B	437	439	Right-handed 310
Helix 45	AE9	B	448	459	Right-handed alpha
Helix 46	AF1	B	492	502	Right-handed alpha
Helix 47	AF2	B	505	509	Right-handed 310
Helix 48	AF3	B	528	537	Right-handed alpha

There are 12 sheets in PDB entry 5BSM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	54	first strand
Strand 2	A	42	46	anti-parallel
Strand 3	A	254	257	parallel
Strand 4	A	228	231	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	161	first strand
Strand 2	A	148	151	parallel
Strand 3	A	125	130	parallel
Strand 4	A	79	82	parallel
Strand 5	A	103	106	parallel
Strand 6	A	183	186	parallel
Strand 7	A	199	202	anti-parallel
Strand 8	A	398	399	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	280	first strand
Strand 2	A	304	307	parallel
Strand 3	A	328	334	parallel
Strand 4	A	341	344	anti-parallel
Strand 5	A	362	363	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	372	first strand
Strand 2	A	386	391	anti-parallel
Strand 3	A	416	424	anti-parallel
Strand 4	A	430	435	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	442	first strand
Strand 2	A	445	447	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	472	first strand
Strand 2	A	476	485	anti-parallel
Strand 3	A	512	515	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	54	first strand
Strand 2	B	42	46	anti-parallel
Strand 3	B	254	257	parallel
Strand 4	B	228	231	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	148	151	parallel
Strand 3	B	125	130	parallel
Strand 4	B	79	82	parallel
Strand 5	B	103	106	parallel
Strand 6	B	183	186	parallel
Strand 7	B	199	202	anti-parallel
Strand 8	B	398	399	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	280	first strand
Strand 2	B	304	307	parallel
Strand 3	B	328	334	parallel
Strand 4	B	341	344	anti-parallel
Strand 5	B	362	363	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	372	first strand
Strand 2	B	386	391	anti-parallel
Strand 3	B	416	424	anti-parallel
Strand 4	B	430	435	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	442	first strand
Strand 2	B	445	447	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	470	first strand
Strand 2	B	478	485	anti-parallel
Strand 3	B	513	516	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BSM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BSM