Analysis of interatomic Contacts of Structural Units in PDB entry:
5BT9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BT9 entry

There are 4 chains in PDB entry 5BT9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6ILE 254
B
 ALA 7GLU 256
C
 GLU 6ALA 255
D
 ARG 8GLU 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 5BT9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
22 35Right-handed alpha
Helix 3
AA3
A
46 60Right-handed alpha
Helix 4
AA4
A
77 87Right-handed alpha
Helix 5
AA5
A
108 120Right-handed alpha
Helix 6
AA6
A
120 134Right-handed alpha
Helix 7
AA7
A
147 152Right-handed 310
Helix 8
AA8
A
157 179Right-handed alpha
Helix 9
AA9
A
199 209Right-handed alpha
Helix 10
AB1
A
218 231Right-handed alpha
Helix 11
AB2
A
244 248Right-handed 310
Helix 12
AB3
B
9 13Right-handed 310
Helix 13
AB4
B
22 35Right-handed alpha
Helix 14
AB5
B
46 60Right-handed alpha
Helix 15
AB6
B
77 87Right-handed alpha
Helix 16
AB7
B
108 120Right-handed alpha
Helix 17
AB8
B
120 134Right-handed alpha
Helix 18
AB9
B
147 152Right-handed 310
Helix 19
AC1
B
157 179Right-handed alpha
Helix 20
AC2
B
200 209Right-handed alpha
Helix 21
AC3
B
218 231Right-handed alpha
Helix 22
AC4
B
244 248Right-handed 310
Helix 23
AC5
B
251 255Right-handed 310
Helix 24
AC6
C
9 13Right-handed 310
Helix 25
AC7
C
22 35Right-handed alpha
Helix 26
AC8
C
46 60Right-handed alpha
Helix 27
AC9
C
74 76Right-handed 310
Helix 28
AD1
C
77 87Right-handed alpha
Helix 29
AD2
C
108 120Right-handed alpha
Helix 30
AD3
C
120 134Right-handed alpha
Helix 31
AD4
C
147 152Right-handed 310
Helix 32
AD5
C
157 179Right-handed alpha
Helix 33
AD6
C
199 209Right-handed alpha
Helix 34
AD7
C
218 231Right-handed alpha
Helix 35
AD8
C
244 248Right-handed 310
Helix 36
AD9
D
9 13Right-handed 310
Helix 37
AE1
D
22 35Right-handed alpha
Helix 38
AE2
D
46 60Right-handed alpha
Helix 39
AE3
D
77 87Right-handed alpha
Helix 40
AE4
D
103 107Right-handed 310
Helix 41
AE5
D
108 120Right-handed alpha
Helix 42
AE6
D
120 134Right-handed alpha
Helix 43
AE7
D
147 152Right-handed 310
Helix 44
AE8
D
157 179Right-handed alpha
Helix 45
AE9
D
201 209Right-handed alpha
Helix 46
AF1
D
218 231Right-handed alpha
Helix 47
AF2
D
244 248Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5BT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
39 43parallel
Strand 3
A
15 17parallel
Strand 4
A
91 94parallel
Strand 5
A
140 145parallel
Strand 6
A
182 189parallel
Strand 7
A
238 241parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
39 43parallel
Strand 3
B
15 17parallel
Strand 4
B
91 94parallel
Strand 5
B
140 145parallel
Strand 6
B
182 189parallel
Strand 7
B
238 241parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 68first strand
Strand 2
C
39 43parallel
Strand 3
C
15 17parallel
Strand 4
C
91 94parallel
Strand 5
C
140 145parallel
Strand 6
C
182 189parallel
Strand 7
C
238 241parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 68first strand
Strand 2
D
39 43parallel
Strand 3
D
15 17parallel
Strand 4
D
91 94parallel
Strand 5
D
140 145parallel
Strand 6
D
182 189parallel
Strand 7
D
238 241parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il