Analysis of interatomic Contacts of Structural Units in PDB entry:
5BTB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BTB entry

There is 1 chain in PDB entry 5BTB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5SER 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5BTB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 55Right-handed alpha
Helix 2
AA2
A
68 73Right-handed alpha
Helix 3
AA3
A
80 95Right-handed alpha
Helix 4
AA4
A
106 115Right-handed alpha
Helix 5
AA5
A
120 123Right-handed 310
Helix 6
AA6
A
153 169Right-handed alpha
Helix 7
AA7
A
174 178Right-handed 310
Helix 8
AA8
A
179 184Right-handed alpha
Helix 9
AA9
A
185 189Right-handed 310
Helix 10
AB1
A
229 231Right-handed 310
Helix 11
AB2
A
244 264Right-handed alpha
Helix 12
AB3
A
290 296Right-handed alpha
Helix 13
AB4
A
304 320Right-handed alpha
Helix 14
AB5
A
325 329Right-handed 310
Helix 15
AB6
A
349 355Right-handed alpha
Helix 16
AB7
A
360 371Right-handed alpha
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There are 3 sheets in PDB entry 5BTB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
341 347anti-parallel
Strand 3
A
332 338anti-parallel
Strand 4
A
125 131anti-parallel
Strand 5
A
134 139anti-parallel
Strand 6
A
102 105parallel
Strand 7
A
208 215parallel
Strand 8
A
196 205anti-parallel
Strand 9
A
22 30anti-parallel
Strand 10
A
34 37anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
170 171anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
233 240anti-parallel
Strand 3
A
269 275parallel
Strand 4
A
281 288anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il