Analysis of interatomic Contacts of Structural Units in PDB entry:
5BU6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BU6 entry

There are 2 chains in PDB entry 5BU6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 35ASN 298
B
 PRO 35ASN 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5BU6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 83Right-handed alpha
Helix 2
AA2
A
89 98Right-handed alpha
Helix 3
AA3
A
117 122Right-handed alpha
Helix 4
AA4
A
122 131Right-handed alpha
Helix 5
AA5
A
139 144Right-handed alpha
Helix 6
AA6
A
160 164Right-handed 310
Helix 7
AA7
A
166 176Right-handed alpha
Helix 8
AA8
A
218 242Right-handed alpha
Helix 9
AA9
A
251 254Right-handed 310
Helix 10
AB1
A
256 266Right-handed alpha
Helix 11
AB2
A
284 288Right-handed 310
Helix 12
AB3
B
73 84Right-handed alpha
Helix 13
AB4
B
89 98Right-handed alpha
Helix 14
AB5
B
117 122Right-handed alpha
Helix 15
AB6
B
122 131Right-handed alpha
Helix 16
AB7
B
139 144Right-handed alpha
Helix 17
AB8
B
160 164Right-handed 310
Helix 18
AB9
B
166 176Right-handed alpha
Helix 19
AC1
B
218 242Right-handed alpha
Helix 20
AC2
B
251 254Right-handed 310
Helix 21
AC3
B
256 266Right-handed alpha
Helix 22
AC4
B
284 288Right-handed 310
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There are 11 sheets in PDB entry 5BU6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
291 296parallel
Strand 3
A
44 50parallel
Strand 4
A
107 113parallel
Strand 5
A
86 87parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
291 296parallel
Strand 3
A
44 50parallel
Strand 4
A
107 113parallel
Strand 5
A
134 138parallel
Strand 6
A
179 183parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
157 159anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
200 202anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
215 216anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
270 272parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
291 296parallel
Strand 3
B
44 50parallel
Strand 4
B
107 113parallel
Strand 5
B
86 87parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
291 296parallel
Strand 3
B
44 50parallel
Strand 4
B
107 113parallel
Strand 5
B
134 138parallel
Strand 6
B
179 183parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
158 159anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 193first strand
Strand 2
B
200 202anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 249first strand
Strand 2
B
270 272parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il