Analysis of interatomic Contacts of Structural Units in PDB entry:
5BV2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BV2 entry

There is 1 chain in PDB entry 5BV2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	LYS 7	LEU 623

There are132 helices in PDB entry 5BV2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	18	23	Right-handed 310
Helix 2	AA2	P	52	57	Right-handed alpha
Helix 3	AA3	P	62	68	Right-handed alpha
Helix 4	AA4	P	107	119	Right-handed alpha
Helix 5	AA5	P	150	154	Right-handed 310
Helix 6	AA6	P	210	212	Right-handed 310
Helix 7	AA7	P	213	222	Right-handed alpha
Helix 8	AA8	P	236	246	Right-handed alpha
Helix 9	AA9	P	249	258	Right-handed alpha
Helix 10	AB1	P	259	262	Right-handed 310
Helix 11	AB2	P	265	269	Right-handed 310
Helix 12	AB3	P	303	314	Right-handed alpha
Helix 13	AB4	P	316	328	Right-handed alpha
Helix 14	AB5	P	344	346	Right-handed 310
Helix 15	AB6	P	381	386	Right-handed alpha
Helix 16	AB7	P	405	418	Right-handed alpha
Helix 17	AB8	P	418	423	Right-handed alpha
Helix 18	AB9	P	427	435	Right-handed 310
Helix 19	AC1	P	498	502	Right-handed 310
Helix 20	AC2	P	505	514	Right-handed alpha
Helix 21	AC3	P	516	533	Right-handed alpha
Helix 22	AC4	P	536	549	Right-handed alpha
Helix 23	AC5	P	551	562	Right-handed alpha
Helix 24	AC6	P	567	572	Right-handed alpha
Helix 25	AC7	P	585	589	Right-handed 310
Helix 26	AC8	P	612	626	Right-handed alpha
Helix 27	AC9	P	658	662	Right-handed 310
Helix 28	AD1	P	672	677	Right-handed alpha
Helix 29	AD2	P	678	691	Right-handed alpha
Helix 30	AD3	P	700	707	Right-handed 310
Helix 31	AD4	P	725	738	Right-handed alpha
Helix 32	AD5	P	741	743	Right-handed 310
Helix 33	AD6	P	744	749	Right-handed alpha
Helix 34	AD7	Q	18	23	Right-handed 310
Helix 35	AD8	Q	52	57	Right-handed alpha
Helix 36	AD9	Q	62	68	Right-handed alpha
Helix 37	AE1	Q	107	119	Right-handed alpha
Helix 38	AE2	Q	150	154	Right-handed 310
Helix 39	AE3	Q	210	212	Right-handed 310
Helix 40	AE4	Q	213	222	Right-handed alpha
Helix 41	AE5	Q	236	246	Right-handed alpha
Helix 42	AE6	Q	249	258	Right-handed alpha
Helix 43	AE7	Q	259	262	Right-handed 310
Helix 44	AE8	Q	265	269	Right-handed 310
Helix 45	AE9	Q	303	314	Right-handed alpha
Helix 46	AF1	Q	316	329	Right-handed alpha
Helix 47	AF2	Q	344	346	Right-handed 310
Helix 48	AF3	Q	381	386	Right-handed alpha
Helix 49	AF4	Q	405	418	Right-handed alpha
Helix 50	AF5	Q	418	423	Right-handed alpha
Helix 51	AF6	Q	427	435	Right-handed 310
Helix 52	AF7	Q	498	502	Right-handed 310
Helix 53	AF8	Q	505	515	Right-handed alpha
Helix 54	AF9	Q	516	533	Right-handed alpha
Helix 55	AG1	Q	536	549	Right-handed alpha
Helix 56	AG2	Q	551	562	Right-handed alpha
Helix 57	AG3	Q	567	572	Right-handed alpha
Helix 58	AG4	Q	585	589	Right-handed 310
Helix 59	AG5	Q	612	626	Right-handed alpha
Helix 60	AG6	Q	658	662	Right-handed 310
Helix 61	AG7	Q	672	677	Right-handed alpha
Helix 62	AG8	Q	678	691	Right-handed alpha
Helix 63	AG9	Q	700	707	Right-handed 310
Helix 64	AH1	Q	725	738	Right-handed alpha
Helix 65	AH2	Q	741	743	Right-handed 310
Helix 66	AH3	Q	744	749	Right-handed alpha
Helix 67	AH4	R	18	23	Right-handed 310
Helix 68	AH5	R	52	57	Right-handed alpha
Helix 69	AH6	R	62	68	Right-handed alpha
Helix 70	AH7	R	107	119	Right-handed alpha
Helix 71	AH8	R	150	154	Right-handed 310
Helix 72	AH9	R	210	212	Right-handed 310
Helix 73	AI1	R	213	222	Right-handed alpha
Helix 74	AI2	R	236	246	Right-handed alpha
Helix 75	AI3	R	249	258	Right-handed alpha
Helix 76	AI4	R	259	262	Right-handed 310
Helix 77	AI5	R	265	269	Right-handed 310
Helix 78	AI6	R	303	314	Right-handed alpha
Helix 79	AI7	R	316	328	Right-handed alpha
Helix 80	AI8	R	344	346	Right-handed 310
Helix 81	AI9	R	381	386	Right-handed alpha
Helix 82	AJ1	R	405	418	Right-handed alpha
Helix 83	AJ2	R	418	423	Right-handed alpha
Helix 84	AJ3	R	427	435	Right-handed 310
Helix 85	AJ4	R	498	502	Right-handed 310
Helix 86	AJ5	R	505	514	Right-handed alpha
Helix 87	AJ6	R	516	533	Right-handed alpha
Helix 88	AJ7	R	536	549	Right-handed alpha
Helix 89	AJ8	R	551	562	Right-handed alpha
Helix 90	AJ9	R	567	572	Right-handed alpha
Helix 91	AK1	R	585	589	Right-handed 310
Helix 92	AK2	R	612	626	Right-handed alpha
Helix 93	AK3	R	658	662	Right-handed 310
Helix 94	AK4	R	672	677	Right-handed alpha
Helix 95	AK5	R	678	691	Right-handed alpha
Helix 96	AK6	R	700	707	Right-handed 310
Helix 97	AK7	R	725	738	Right-handed alpha
Helix 98	AK8	R	741	743	Right-handed 310
Helix 99	AK9	R	744	749	Right-handed alpha
Helix 100	AL1	S	18	23	Right-handed 310
Helix 101	AL2	S	52	57	Right-handed alpha
Helix 102	AL3	S	62	68	Right-handed alpha
Helix 103	AL4	S	107	119	Right-handed alpha
Helix 104	AL5	S	150	154	Right-handed 310
Helix 105	AL6	S	210	212	Right-handed 310
Helix 106	AL7	S	213	222	Right-handed alpha
Helix 107	AL8	S	236	246	Right-handed alpha
Helix 108	AL9	S	249	258	Right-handed alpha
Helix 109	AM1	S	259	262	Right-handed 310
Helix 110	AM2	S	265	269	Right-handed 310
Helix 111	AM3	S	303	314	Right-handed alpha
Helix 112	AM4	S	316	329	Right-handed alpha
Helix 113	AM5	S	344	346	Right-handed 310
Helix 114	AM6	S	381	386	Right-handed alpha
Helix 115	AM7	S	405	418	Right-handed alpha
Helix 116	AM8	S	418	423	Right-handed alpha
Helix 117	AM9	S	427	435	Right-handed 310
Helix 118	AN1	S	498	502	Right-handed 310
Helix 119	AN2	S	505	515	Right-handed alpha
Helix 120	AN3	S	516	533	Right-handed alpha
Helix 121	AN4	S	536	549	Right-handed alpha
Helix 122	AN5	S	551	562	Right-handed alpha
Helix 123	AN6	S	567	572	Right-handed alpha
Helix 124	AN7	S	585	589	Right-handed 310
Helix 125	AN8	S	612	626	Right-handed alpha
Helix 126	AN9	S	658	662	Right-handed 310
Helix 127	AO1	S	672	677	Right-handed alpha
Helix 128	AO2	S	678	691	Right-handed alpha
Helix 129	AO3	S	700	707	Right-handed 310
Helix 130	AO4	S	727	738	Right-handed alpha
Helix 131	AO5	S	741	743	Right-handed 310
Helix 132	AO6	S	744	749	Right-handed alpha

There are 18 sheets in PDB entry 5BV2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	72	73	first strand
Strand 2	R	453	454	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	95	97	first strand
Strand 2	S	488	495	anti-parallel
Strand 3	R	488	495	anti-parallel
Strand 4	Q	95	97	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	400	401	first strand
Strand 2	P	277	280	anti-parallel
Strand 3	P	286	295	anti-parallel
Strand 4	P	333	342	anti-parallel
Strand 5	P	368	377	anti-parallel
Strand 6	P	131	140	anti-parallel
Strand 7	P	160	167	anti-parallel
Strand 8	P	184	191	anti-parallel
Strand 9	P	194	201	anti-parallel
Strand 10	P	271	272	anti-parallel
Strand 11	P	286	295	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	453	454	first strand
Strand 2	R	72	73	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	95	97	first strand
Strand 2	Q	488	495	anti-parallel
Strand 3	P	488	495	anti-parallel
Strand 4	S	95	97	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	652	653	first strand
Strand 2	P	629	634	parallel
Strand 3	P	602	606	parallel
Strand 4	P	664	667	parallel
Strand 5	P	695	698	parallel
Strand 6	P	718	721	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	639	641	first strand
Strand 2	P	647	649	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	72	73	first strand
Strand 2	S	453	454	parallel

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There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	400	401	first strand
Strand 2	Q	277	280	anti-parallel
Strand 3	Q	286	295	anti-parallel
Strand 4	Q	333	342	anti-parallel
Strand 5	Q	368	377	anti-parallel
Strand 6	Q	131	140	anti-parallel
Strand 7	Q	160	167	anti-parallel
Strand 8	Q	184	191	anti-parallel
Strand 9	Q	194	201	anti-parallel
Strand 10	Q	271	272	anti-parallel
Strand 11	Q	286	295	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	453	454	first strand
Strand 2	S	72	73	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	652	653	first strand
Strand 2	Q	629	634	parallel
Strand 3	Q	602	606	parallel
Strand 4	Q	664	667	parallel
Strand 5	Q	695	698	parallel
Strand 6	Q	718	721	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	639	641	first strand
Strand 2	Q	647	649	anti-parallel

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There are 11 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	400	401	first strand
Strand 2	R	277	280	anti-parallel
Strand 3	R	286	295	anti-parallel
Strand 4	R	333	342	anti-parallel
Strand 5	R	368	377	anti-parallel
Strand 6	R	131	140	anti-parallel
Strand 7	R	160	167	anti-parallel
Strand 8	R	184	191	anti-parallel
Strand 9	R	194	201	anti-parallel
Strand 10	R	271	272	anti-parallel
Strand 11	R	286	295	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	652	653	first strand
Strand 2	R	629	634	parallel
Strand 3	R	602	606	parallel
Strand 4	R	664	667	parallel
Strand 5	R	695	698	parallel
Strand 6	R	718	721	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	639	641	first strand
Strand 2	R	647	649	anti-parallel

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There are 11 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	400	401	first strand
Strand 2	S	277	280	anti-parallel
Strand 3	S	286	295	anti-parallel
Strand 4	S	333	342	anti-parallel
Strand 5	S	368	377	anti-parallel
Strand 6	S	131	140	anti-parallel
Strand 7	S	160	167	anti-parallel
Strand 8	S	184	191	anti-parallel
Strand 9	S	194	201	anti-parallel
Strand 10	S	271	272	anti-parallel
Strand 11	S	286	295	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	652	653	first strand
Strand 2	S	629	634	parallel
Strand 3	S	602	606	parallel
Strand 4	S	664	667	parallel
Strand 5	S	695	698	parallel
Strand 6	S	718	721	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	639	641	first strand
Strand 2	S	647	649	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BV2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BV2