Analysis of interatomic Contacts of Structural Units in PDB entry:
5BV3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BV3 entry

There are 4 chains in PDB entry 5BV3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 7	ILE 345
B	GLY 6	LYS 344
C	GLY 6	VAL 346
D	GLY 6	LEU 298

There are 60 helices in PDB entry 5BV3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	15	Right-handed alpha
Helix 2	AA2	A	120	128	Right-handed alpha
Helix 3	AA3	A	138	154	Right-handed alpha
Helix 4	AA4	A	159	168	Right-handed alpha
Helix 5	AA5	A	171	175	Right-handed 310
Helix 6	AA6	A	201	204	Right-handed 310
Helix 7	AA7	A	218	222	Right-handed 310
Helix 8	AA8	A	223	225	Right-handed 310
Helix 9	AA9	A	226	245	Right-handed alpha
Helix 10	AB1	A	250	252	Right-handed 310
Helix 11	AB2	A	291	298	Right-handed alpha
Helix 12	AB3	A	304	309	Right-handed 310
Helix 13	AB4	A	319	324	Right-handed alpha
Helix 14	AB5	A	325	337	Right-handed alpha
Helix 15	AB6	B	7	15	Right-handed alpha
Helix 16	AB7	B	66	70	Right-handed 310
Helix 17	AB8	B	120	128	Right-handed alpha
Helix 18	AB9	B	138	153	Right-handed alpha
Helix 19	AC1	B	162	168	Right-handed alpha
Helix 20	AC2	B	181	185	Right-handed 310
Helix 21	AC3	B	201	204	Right-handed 310
Helix 22	AC4	B	218	222	Right-handed 310
Helix 23	AC5	B	223	225	Right-handed 310
Helix 24	AC6	B	226	245	Right-handed alpha
Helix 25	AC7	B	250	252	Right-handed 310
Helix 26	AC8	B	280	284	Right-handed 310
Helix 27	AC9	B	291	299	Right-handed alpha
Helix 28	AD1	B	304	309	Right-handed 310
Helix 29	AD2	B	319	324	Right-handed alpha
Helix 30	AD3	B	325	338	Right-handed alpha
Helix 31	AD4	C	7	15	Right-handed alpha
Helix 32	AD5	C	120	128	Right-handed alpha
Helix 33	AD6	C	138	152	Right-handed alpha
Helix 34	AD7	C	159	168	Right-handed alpha
Helix 35	AD8	C	171	175	Right-handed 310
Helix 36	AD9	C	181	187	Right-handed 310
Helix 37	AE1	C	201	204	Right-handed 310
Helix 38	AE2	C	218	222	Right-handed 310
Helix 39	AE3	C	223	225	Right-handed 310
Helix 40	AE4	C	226	245	Right-handed alpha
Helix 41	AE5	C	250	252	Right-handed 310
Helix 42	AE6	C	291	299	Right-handed alpha
Helix 43	AE7	C	304	309	Right-handed 310
Helix 44	AE8	C	319	324	Right-handed alpha
Helix 45	AE9	C	325	337	Right-handed alpha
Helix 46	AF1	D	7	15	Right-handed alpha
Helix 47	AF2	D	120	128	Right-handed alpha
Helix 48	AF3	D	138	153	Right-handed alpha
Helix 49	AF4	D	163	168	Right-handed alpha
Helix 50	AF5	D	181	185	Right-handed 310
Helix 51	AF6	D	201	204	Right-handed 310
Helix 52	AF7	D	218	222	Right-handed 310
Helix 53	AF8	D	223	225	Right-handed 310
Helix 54	AF9	D	226	245	Right-handed alpha
Helix 55	AG1	D	250	252	Right-handed 310
Helix 56	AG2	D	280	284	Right-handed 310
Helix 57	AG3	D	291	298	Right-handed alpha
Helix 58	AG4	D	304	309	Right-handed 310
Helix 59	AG5	D	319	324	Right-handed alpha
Helix 60	AG6	D	325	337	Right-handed alpha

There are 13 sheets in PDB entry 5BV3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	24	first strand
Strand 2	A	29	36	anti-parallel
Strand 3	A	39	47	anti-parallel
Strand 4	A	111	116	anti-parallel
Strand 5	B	94	101	anti-parallel
Strand 6	B	82	91	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	91	first strand
Strand 2	A	94	101	anti-parallel
Strand 3	B	111	116	anti-parallel
Strand 4	B	39	47	anti-parallel
Strand 5	B	29	36	anti-parallel
Strand 6	B	16	24	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	137	first strand
Strand 2	A	311	316	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	179	first strand
Strand 2	A	189	193	anti-parallel
Strand 3	A	206	211	anti-parallel
Strand 4	A	268	273	anti-parallel
Strand 5	A	254	259	anti-parallel
Strand 6	A	288	290	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	137	first strand
Strand 2	B	311	316	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	189	193	anti-parallel
Strand 3	B	206	211	anti-parallel
Strand 4	B	268	273	anti-parallel
Strand 5	B	254	259	anti-parallel
Strand 6	B	288	290	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	24	first strand
Strand 2	C	29	36	anti-parallel
Strand 3	C	39	47	anti-parallel
Strand 4	C	111	116	anti-parallel
Strand 5	D	94	101	anti-parallel
Strand 6	D	82	91	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	67	68	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	91	first strand
Strand 2	C	94	101	anti-parallel
Strand 3	D	111	116	anti-parallel
Strand 4	D	39	47	anti-parallel
Strand 5	D	29	36	anti-parallel
Strand 6	D	16	24	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	137	first strand
Strand 2	C	311	316	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	179	first strand
Strand 2	C	189	193	anti-parallel
Strand 3	C	206	211	anti-parallel
Strand 4	C	268	273	anti-parallel
Strand 5	C	254	259	anti-parallel
Strand 6	C	288	290	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	137	first strand
Strand 2	D	311	316	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	178	first strand
Strand 2	D	189	193	anti-parallel
Strand 3	D	206	211	anti-parallel
Strand 4	D	268	273	anti-parallel
Strand 5	D	254	259	anti-parallel
Strand 6	D	288	290	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BV3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BV3