Analysis of interatomic Contacts of Structural Units in PDB entry:
5BV5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BV5 entry

There are 4 chains in PDB entry 5BV5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 365
B	MET 1	LYS 365
D	MET 1	SER 366
C	MET 1	LEU 364

There are 57 helices in PDB entry 5BV5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	12	Right-handed alpha
Helix 2	AA2	A	25	35	Right-handed alpha
Helix 3	AA3	A	74	87	Right-handed alpha
Helix 4	AA4	A	88	109	Right-handed alpha
Helix 5	AA5	A	117	121	Right-handed alpha
Helix 6	AA6	A	123	135	Right-handed alpha
Helix 7	AA7	A	139	148	Right-handed alpha
Helix 8	AA8	A	162	179	Right-handed alpha
Helix 9	AA9	A	182	186	Right-handed alpha
Helix 10	AB1	A	195	210	Right-handed alpha
Helix 11	AB2	A	210	228	Right-handed alpha
Helix 12	AB3	A	230	238	Right-handed alpha
Helix 13	AB4	A	239	251	Right-handed alpha
Helix 14	AB5	A	282	286	Right-handed alpha
Helix 15	AB6	A	319	338	Right-handed alpha
Helix 16	AB7	B	2	12	Right-handed alpha
Helix 17	AB8	B	25	35	Right-handed alpha
Helix 18	AB9	B	88	110	Right-handed alpha
Helix 19	AC1	B	117	121	Right-handed alpha
Helix 20	AC2	B	123	135	Right-handed alpha
Helix 21	AC3	B	142	150	Right-handed alpha
Helix 22	AC4	B	165	176	Right-handed alpha
Helix 23	AC5	B	195	210	Right-handed alpha
Helix 24	AC6	B	210	228	Right-handed alpha
Helix 25	AC7	B	230	238	Right-handed alpha
Helix 26	AC8	B	239	251	Right-handed alpha
Helix 27	AC9	B	282	286	Right-handed alpha
Helix 28	AD1	B	319	338	Right-handed alpha
Helix 29	AD2	D	2	11	Right-handed alpha
Helix 30	AD3	D	25	35	Right-handed alpha
Helix 31	AD4	D	74	87	Right-handed alpha
Helix 32	AD5	D	88	110	Right-handed alpha
Helix 33	AD6	D	117	121	Right-handed alpha
Helix 34	AD7	D	123	135	Right-handed alpha
Helix 35	AD8	D	140	152	Right-handed alpha
Helix 36	AD9	D	162	179	Right-handed alpha
Helix 37	AE1	D	182	190	Right-handed alpha
Helix 38	AE2	D	193	210	Right-handed alpha
Helix 39	AE3	D	211	228	Right-handed alpha
Helix 40	AE4	D	230	238	Right-handed alpha
Helix 41	AE5	D	239	251	Right-handed alpha
Helix 42	AE6	D	282	286	Right-handed alpha
Helix 43	AE7	D	319	338	Right-handed alpha
Helix 44	AE8	C	2	12	Right-handed alpha
Helix 45	AE9	C	25	35	Right-handed alpha
Helix 46	AF1	C	75	87	Right-handed alpha
Helix 47	AF2	C	88	109	Right-handed alpha
Helix 48	AF3	C	117	121	Right-handed alpha
Helix 49	AF4	C	123	135	Right-handed alpha
Helix 50	AF5	C	160	179	Right-handed alpha
Helix 51	AF6	C	182	190	Right-handed alpha
Helix 52	AF7	C	194	210	Right-handed alpha
Helix 53	AF8	C	210	228	Right-handed alpha
Helix 54	AF9	C	230	238	Right-handed alpha
Helix 55	AG1	C	239	251	Right-handed alpha
Helix 56	AG2	C	282	286	Right-handed alpha
Helix 57	AG3	C	319	338	Right-handed alpha

There are 12 sheets in PDB entry 5BV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	21	23	anti-parallel
Strand 3	A	277	281	parallel
Strand 4	A	256	261	anti-parallel
Strand 5	A	39	40	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	357	364	anti-parallel
Strand 3	A	341	348	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	A	270	272	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	B	21	23	anti-parallel
Strand 3	B	277	281	parallel
Strand 4	B	256	261	anti-parallel
Strand 5	B	39	40	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	357	363	anti-parallel
Strand 3	B	342	348	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	B	270	272	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	16	first strand
Strand 2	D	21	23	anti-parallel
Strand 3	D	277	281	parallel
Strand 4	D	256	261	anti-parallel
Strand 5	D	39	40	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	116	first strand
Strand 2	D	357	363	anti-parallel
Strand 3	D	342	348	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	266	first strand
Strand 2	D	271	272	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	21	23	anti-parallel
Strand 3	C	277	281	parallel
Strand 4	C	256	261	anti-parallel
Strand 5	C	39	40	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	116	first strand
Strand 2	C	357	363	anti-parallel
Strand 3	C	342	348	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	267	first strand
Strand 2	C	270	272	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BV5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BV5