Analysis of interatomic Contacts of Structural Units in PDB entry:
5BV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BV8 entry

There is 1 chain in PDB entry 5BV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1261LEU 1469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 5BV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1289 1306Right-handed alpha
Helix 2
AA2
A
1336 1346Right-handed alpha
Helix 3
AA3
A
1356 1367Right-handed alpha
Helix 4
AA4
A
1390 1394Right-handed 310
Helix 5
AA5
A
1396 1407Right-handed alpha
Helix 6
AA6
A
1421 1432Right-handed alpha
Helix 7
AA7
A
1442 1444Right-handed 310
Helix 8
AA8
A
1445 1461Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5BV8.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1325 1329first strand
Strand 2
A
1314 1321anti-parallel
Strand 3
A
1276 1283parallel
Strand 4
A
1378 1385parallel
Strand 5
A
1409 1416parallel
Strand 6
A
1438 1440parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il