Analysis of interatomic Contacts of Structural Units in PDB entry:
5BVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BVA entry

There is 1 chain in PDB entry 5BVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5GLN 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5BVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
50 60Right-handed alpha
Helix 3
AA3
A
62 69Right-handed alpha
Helix 4
AA4
A
100 115Right-handed alpha
Helix 5
AA5
A
157 160Right-handed 310
Helix 6
AA6
A
161 166Right-handed alpha
Helix 7
AA7
A
176 178Right-handed 310
Helix 8
AA8
A
230 237Right-handed alpha
Helix 9
AA9
A
239 251Right-handed alpha
Helix 10
AB1
A
252 259Right-handed alpha
Helix 11
AB2
A
290 292Right-handed 310
Helix 12
AB3
A
297 301Right-handed 310
Helix 13
AB4
A
302 323Right-handed alpha
Helix 14
AB5
A
327 355Right-handed alpha
Helix 15
AB6
A
355 364Right-handed alpha
Helix 16
AB7
A
365 377Right-handed alpha
Helix 17
AB8
A
387 402Right-handed alpha
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There are 4 sheets in PDB entry 5BVA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 121first strand
Strand 2
A
32 36parallel
Strand 3
A
6 12parallel
Strand 4
A
145 155parallel
Strand 5
A
133 140anti-parallel
Strand 6
A
123 130anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 121first strand
Strand 2
A
32 36parallel
Strand 3
A
6 12parallel
Strand 4
A
145 155parallel
Strand 5
A
286 288parallel
Strand 6
A
282 283anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
201 205parallel
Strand 4
A
211 216anti-parallel
Strand 5
A
221 229anti-parallel
Strand 6
A
180 188anti-parallel
Strand 7
A
263 273anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
276 278anti-parallel
Strand 3
A
294 295anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il