Analysis of interatomic Contacts of Structural Units in PDB entry:
5BVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BVF entry

There is 1 chain in PDB entry 5BVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7TYR 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5BVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 76Right-handed alpha
Helix 2
AA2
A
110 117Right-handed alpha
Helix 3
AA3
A
120 141Right-handed alpha
Helix 4
AA4
A
149 151Right-handed 310
Helix 5
AA5
A
205 222Right-handed alpha
Helix 6
AA6
A
230 243Right-handed alpha
Helix 7
AA7
A
246 251Right-handed alpha
Helix 8
AA8
A
255 265Right-handed alpha
Helix 9
AA9
A
272 277Right-handed alpha
Helix 10
AB1
A
281 292Right-handed alpha
Helix 11
AB2
A
295 299Right-handed 310
Helix 12
AB3
A
301 307Right-handed alpha
Helix 13
AB4
A
308 312Right-handed 310
Helix 14
AB5
A
316 320Right-handed 310
Helix 15
AB6
A
337 349Right-handed alpha
Helix 16
AB7
A
350 353Right-handed 310
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There are 3 sheets in PDB entry 5BVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
15 16anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 32first strand
Strand 2
A
35 42anti-parallel
Strand 3
A
47 54anti-parallel
Strand 4
A
99 104anti-parallel
Strand 5
A
86 88anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
153 155anti-parallel
Strand 3
A
161 163anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il