Analysis of interatomic Contacts of Structural Units in PDB entry:
5BVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BVI entry

There are 2 chains in PDB entry 5BVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 239ASN 420
B
 ARG 240ASN 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5BVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
240 249Right-handed alpha
Helix 2
AA2
A
300 309Right-handed alpha
Helix 3
AA3
A
361 375Right-handed alpha
Helix 4
AA4
A
408 419Right-handed alpha
Helix 5
AA5
B
241 247Right-handed alpha
Helix 6
AA6
B
300 310Right-handed alpha
Helix 7
AA7
B
361 375Right-handed alpha
Helix 8
AA8
B
408 418Right-handed alpha
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There are 4 sheets in PDB entry 5BVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 267first strand
Strand 2
A
252 258anti-parallel
Strand 3
A
401 407anti-parallel
Strand 4
A
383 387anti-parallel
Strand 5
A
334 337anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
274 277parallel
Strand 3
A
315 319anti-parallel
Strand 4
A
323 328anti-parallel
Strand 5
A
355 360anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 267first strand
Strand 2
B
252 258anti-parallel
Strand 3
B
401 407anti-parallel
Strand 4
B
383 387anti-parallel
Strand 5
B
334 337anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 291first strand
Strand 2
B
274 277parallel
Strand 3
B
315 320anti-parallel
Strand 4
B
323 328anti-parallel
Strand 5
B
355 360anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il