Analysis of interatomic Contacts of Structural Units in PDB entry:
5BWE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BWE entry

There are 6 chains in PDB entry 5BWE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 9	ILE 865
B	GLN 13	VAL 81
C	ASN 11	PHE 47
D	LYS 9	ILE 865
F	GLN 13	VAL 81
G	ASN 11	PHE 47

There are 91 helices in PDB entry 5BWE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	29	Right-handed 310
Helix 2	AA2	A	31	39	Right-handed 310
Helix 3	AA3	A	44	53	Right-handed alpha
Helix 4	AA4	A	73	86	Right-handed alpha
Helix 5	AA5	A	90	106	Right-handed alpha
Helix 6	AA6	A	134	143	Right-handed alpha
Helix 7	AA7	A	150	162	Right-handed alpha
Helix 8	AA8	A	165	171	Right-handed alpha
Helix 9	AA9	A	172	174	Right-handed 310
Helix 10	AB1	A	175	184	Right-handed alpha
Helix 11	AB2	A	191	196	Right-handed alpha
Helix 12	AB3	A	203	211	Right-handed alpha
Helix 13	AB4	A	211	231	Right-handed alpha
Helix 14	AB5	A	239	241	Right-handed 310
Helix 15	AB6	A	242	278	Right-handed alpha
Helix 16	AB7	A	281	298	Right-handed alpha
Helix 17	AB8	A	305	322	Right-handed alpha
Helix 18	AB9	A	333	346	Right-handed alpha
Helix 19	AC1	A	355	372	Right-handed alpha
Helix 20	AC2	A	379	384	Right-handed alpha
Helix 21	AC3	A	408	422	Right-handed alpha
Helix 22	AC4	A	437	450	Right-handed alpha
Helix 23	AC5	A	460	472	Right-handed alpha
Helix 24	AC6	A	483	486	Right-handed 310
Helix 25	AC7	A	516	525	Right-handed alpha
Helix 26	AC8	A	544	548	Right-handed 310
Helix 27	AC9	A	550	584	Right-handed alpha
Helix 28	AD1	A	586	592	Right-handed alpha
Helix 29	AD2	A	593	600	Right-handed alpha
Helix 30	AD3	A	618	634	Right-handed alpha
Helix 31	AD4	A	640	650	Right-handed alpha
Helix 32	AD5	A	655	665	Right-handed alpha
Helix 33	AD6	A	672	686	Right-handed alpha
Helix 34	AD7	A	690	694	Right-handed 310
Helix 35	AD8	A	710	715	Right-handed alpha
Helix 36	AD9	A	716	719	Right-handed 310
Helix 37	AE1	A	747	756	Right-handed alpha
Helix 38	AE2	A	772	777	Right-handed alpha
Helix 39	AE3	A	780	795	Right-handed alpha
Helix 40	AE4	A	806	816	Right-handed alpha
Helix 41	AE5	A	817	820	Right-handed 310
Helix 42	AE6	A	835	837	Right-handed 310
Helix 43	AE7	A	838	847	Right-handed alpha
Helix 44	AE8	A	854	861	Right-handed alpha
Helix 45	AE9	B	25	29	Right-handed 310
Helix 46	AF1	B	76	80	Right-handed 310
Helix 47	AF2	D	24	29	Right-handed 310
Helix 48	AF3	D	31	39	Right-handed 310
Helix 49	AF4	D	44	53	Right-handed alpha
Helix 50	AF5	D	73	86	Right-handed alpha
Helix 51	AF6	D	90	106	Right-handed alpha
Helix 52	AF7	D	134	143	Right-handed alpha
Helix 53	AF8	D	150	162	Right-handed alpha
Helix 54	AF9	D	165	171	Right-handed alpha
Helix 55	AG1	D	172	174	Right-handed 310
Helix 56	AG2	D	175	184	Right-handed alpha
Helix 57	AG3	D	191	196	Right-handed alpha
Helix 58	AG4	D	203	211	Right-handed alpha
Helix 59	AG5	D	211	231	Right-handed alpha
Helix 60	AG6	D	241	278	Right-handed alpha
Helix 61	AG7	D	281	298	Right-handed alpha
Helix 62	AG8	D	305	322	Right-handed alpha
Helix 63	AG9	D	333	346	Right-handed alpha
Helix 64	AH1	D	355	372	Right-handed alpha
Helix 65	AH2	D	378	384	Right-handed alpha
Helix 66	AH3	D	408	422	Right-handed alpha
Helix 67	AH4	D	437	450	Right-handed alpha
Helix 68	AH5	D	460	472	Right-handed alpha
Helix 69	AH6	D	483	486	Right-handed 310
Helix 70	AH7	D	516	525	Right-handed alpha
Helix 71	AH8	D	544	548	Right-handed 310
Helix 72	AH9	D	550	584	Right-handed alpha
Helix 73	AI1	D	586	592	Right-handed alpha
Helix 74	AI2	D	593	600	Right-handed alpha
Helix 75	AI3	D	618	634	Right-handed alpha
Helix 76	AI4	D	640	650	Right-handed alpha
Helix 77	AI5	D	655	665	Right-handed alpha
Helix 78	AI6	D	672	686	Right-handed alpha
Helix 79	AI7	D	690	694	Right-handed 310
Helix 80	AI8	D	710	715	Right-handed alpha
Helix 81	AI9	D	716	719	Right-handed 310
Helix 82	AJ1	D	747	756	Right-handed alpha
Helix 83	AJ2	D	772	777	Right-handed alpha
Helix 84	AJ3	D	780	795	Right-handed alpha
Helix 85	AJ4	D	806	816	Right-handed alpha
Helix 86	AJ5	D	817	820	Right-handed 310
Helix 87	AJ6	D	835	837	Right-handed 310
Helix 88	AJ7	D	838	847	Right-handed alpha
Helix 89	AJ8	D	854	861	Right-handed alpha
Helix 90	AJ9	F	25	29	Right-handed 310
Helix 91	AK1	F	76	80	Right-handed 310

There are 22 sheets in PDB entry 5BWE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	16	19	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	63	64	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	126	127	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	C	39	46	anti-parallel
Strand 3	C	27	34	anti-parallel
Strand 4	C	12	14	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	397	first strand
Strand 2	A	427	432	parallel
Strand 3	A	456	459	parallel
Strand 4	A	799	803	anti-parallel
Strand 5	A	768	771	parallel
Strand 6	A	850	851	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	490	first strand
Strand 2	A	496	498	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	515	first strand
Strand 2	A	613	616	parallel
Strand 3	A	703	706	parallel
Strand 4	A	764	765	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	530	first strand
Strand 2	A	536	537	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	826	first strand
Strand 2	A	831	833	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	18	first strand
Strand 2	B	65	66	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	42	44	anti-parallel
Strand 3	B	57	59	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	16	19	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	63	64	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	71	first strand
Strand 2	D	126	127	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	111	first strand
Strand 2	G	39	46	anti-parallel
Strand 3	G	27	34	anti-parallel
Strand 4	G	12	14	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	397	first strand
Strand 2	D	427	432	parallel
Strand 3	D	456	459	parallel
Strand 4	D	799	803	anti-parallel
Strand 5	D	768	771	parallel
Strand 6	D	850	851	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	488	490	first strand
Strand 2	D	496	498	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	515	first strand
Strand 2	D	613	616	parallel
Strand 3	D	703	706	parallel
Strand 4	D	764	765	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	529	530	first strand
Strand 2	D	536	537	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	824	826	first strand
Strand 2	D	831	833	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	18	first strand
Strand 2	F	65	66	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	34	first strand
Strand 2	F	42	44	anti-parallel
Strand 3	F	57	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BWE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BWE