Analysis of interatomic Contacts of Structural Units in PDB entry:
5BWJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BWJ entry

There are 4 chains in PDB entry 5BWJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 27	LYS 234
B	SER 26	PRO 236
C	SER 26	GLU 237
D	LYS 27	ASN 76

There are 32 helices in PDB entry 5BWJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	65	Right-handed alpha
Helix 2	AA2	A	78	82	Right-handed 310
Helix 3	AA3	A	96	99	Right-handed 310
Helix 4	AA4	A	142	151	Right-handed alpha
Helix 5	AA5	A	161	171	Right-handed alpha
Helix 6	AA6	A	181	192	Right-handed alpha
Helix 7	AA7	A	218	223	Right-handed alpha
Helix 8	AA8	A	227	232	Right-handed 310
Helix 9	AA9	B	53	65	Right-handed alpha
Helix 10	AB1	B	78	82	Right-handed 310
Helix 11	AB2	B	96	99	Right-handed 310
Helix 12	AB3	B	142	151	Right-handed alpha
Helix 13	AB4	B	161	171	Right-handed alpha
Helix 14	AB5	B	182	192	Right-handed alpha
Helix 15	AB6	B	218	223	Right-handed alpha
Helix 16	AB7	B	227	232	Right-handed 310
Helix 17	AB8	C	53	65	Right-handed alpha
Helix 18	AB9	C	96	99	Right-handed 310
Helix 19	AC1	C	130	134	Right-handed 310
Helix 20	AC2	C	142	151	Right-handed alpha
Helix 21	AC3	C	161	171	Right-handed alpha
Helix 22	AC4	C	181	192	Right-handed alpha
Helix 23	AC5	C	218	223	Right-handed alpha
Helix 24	AC6	C	227	232	Right-handed 310
Helix 25	AC7	D	53	65	Right-handed alpha
Helix 26	AC8	D	96	99	Right-handed 310
Helix 27	AC9	D	130	134	Right-handed 310
Helix 28	AD1	D	142	151	Right-handed alpha
Helix 29	AD2	D	161	171	Right-handed alpha
Helix 30	AD3	D	181	192	Right-handed alpha
Helix 31	AD4	D	218	223	Right-handed alpha
Helix 32	AD5	D	227	233	Right-handed 310

There are 12 sheets in PDB entry 5BWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	74	first strand
Strand 2	A	28	35	parallel
Strand 3	A	87	91	parallel
Strand 4	A	205	214	anti-parallel
Strand 5	A	101	117	anti-parallel
Strand 6	A	196	198	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	A	136	139	parallel
Strand 3	A	176	180	parallel
Strand 4	A	101	117	anti-parallel
Strand 5	A	205	214	anti-parallel
Strand 6	B	233	234	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	50	51	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	74	first strand
Strand 2	B	28	35	parallel
Strand 3	B	87	91	parallel
Strand 4	B	206	214	anti-parallel
Strand 5	B	101	116	anti-parallel
Strand 6	B	176	180	anti-parallel
Strand 7	B	136	139	parallel
Strand 8	B	156	159	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	74	first strand
Strand 2	B	28	35	parallel
Strand 3	B	87	91	parallel
Strand 4	B	206	214	anti-parallel
Strand 5	B	101	116	anti-parallel
Strand 6	B	197	198	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	50	51	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	74	first strand
Strand 2	C	28	35	parallel
Strand 3	C	87	91	parallel
Strand 4	C	206	214	anti-parallel
Strand 5	C	101	117	anti-parallel
Strand 6	C	176	180	anti-parallel
Strand 7	C	136	139	parallel
Strand 8	C	156	159	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	74	first strand
Strand 2	C	28	35	parallel
Strand 3	C	87	91	parallel
Strand 4	C	206	214	anti-parallel
Strand 5	C	101	117	anti-parallel
Strand 6	C	196	198	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	50	51	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	74	first strand
Strand 2	D	28	35	parallel
Strand 3	D	87	89	parallel
Strand 4	D	206	214	anti-parallel
Strand 5	D	101	117	anti-parallel
Strand 6	D	176	180	anti-parallel
Strand 7	D	136	139	parallel
Strand 8	D	156	159	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	74	first strand
Strand 2	D	28	35	parallel
Strand 3	D	87	89	parallel
Strand 4	D	206	214	anti-parallel
Strand 5	D	101	117	anti-parallel
Strand 6	D	196	198	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	44	first strand
Strand 2	D	50	51	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BWJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BWJ