Analysis of interatomic Contacts of Structural Units in PDB entry:
5BWW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BWW entry

There are 2 chains in PDB entry 5BWW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3VAL 365
B
 SER 2VAL 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5BWW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
65 70Right-handed alpha
Helix 3
AA3
A
92 107Right-handed alpha
Helix 4
AA4
A
113 128Right-handed alpha
Helix 5
AA5
A
129 132Right-handed 310
Helix 6
AA6
A
203 208Right-handed 310
Helix 7
AA7
A
209 220Right-handed alpha
Helix 8
AA8
A
268 282Right-handed alpha
Helix 9
AA9
A
292 302Right-handed alpha
Helix 10
AB1
A
334 338Right-handed 310
Helix 11
AB2
A
339 354Right-handed alpha
Helix 12
AB3
B
6 10Right-handed 310
Helix 13
AB4
B
65 70Right-handed alpha
Helix 14
AB5
B
92 107Right-handed alpha
Helix 15
AB6
B
113 128Right-handed alpha
Helix 16
AB7
B
129 132Right-handed 310
Helix 17
AB8
B
203 208Right-handed 310
Helix 18
AB9
B
209 220Right-handed alpha
Helix 19
AC1
B
268 282Right-handed alpha
Helix 20
AC2
B
292 302Right-handed alpha
Helix 21
AC3
B
334 338Right-handed 310
Helix 22
AC4
B
339 354Right-handed alpha
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There are 9 sheets in PDB entry 5BWW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
52 55parallel
Strand 3
A
37 44anti-parallel
Strand 4
A
161 170anti-parallel
Strand 5
A
139 148anti-parallel
Strand 6
A
73 75anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
161 170anti-parallel
Strand 4
A
139 148anti-parallel
Strand 5
A
78 82anti-parallel
Strand 6
A
88 91anti-parallel
Strand 7
A
362 364anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
B
59 61anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
254 258parallel
Strand 3
A
241 248anti-parallel
Strand 4
A
234 238anti-parallel
Strand 5
A
224 229anti-parallel
Strand 6
A
182 186parallel
Strand 7
A
316 325parallel
Strand 8
A
328 331anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
254 258parallel
Strand 3
A
241 248anti-parallel
Strand 4
A
305 312anti-parallel
Strand 5
A
316 325anti-parallel
Strand 6
A
328 331anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
52 55parallel
Strand 3
B
37 44anti-parallel
Strand 4
B
161 170anti-parallel
Strand 5
B
139 148anti-parallel
Strand 6
B
73 75anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
37 44anti-parallel
Strand 3
B
161 170anti-parallel
Strand 4
B
139 148anti-parallel
Strand 5
B
78 82anti-parallel
Strand 6
B
88 91anti-parallel
Strand 7
B
362 364anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 288first strand
Strand 2
B
254 258parallel
Strand 3
B
241 248anti-parallel
Strand 4
B
234 238anti-parallel
Strand 5
B
224 229anti-parallel
Strand 6
B
182 186parallel
Strand 7
B
316 325parallel
Strand 8
B
328 331anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 288first strand
Strand 2
B
254 258parallel
Strand 3
B
241 248anti-parallel
Strand 4
B
305 312anti-parallel
Strand 5
B
316 325anti-parallel
Strand 6
B
328 331anti-parallel
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