Analysis of interatomic Contacts of Structural Units in PDB entry:
5BXA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BXA entry

There is 1 chain in PDB entry 5BXA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 29GLU 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 5BXA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 46Right-handed alpha
Helix 2
AA2
A
52 56Right-handed 310
Helix 3
AA3
A
57 71Right-handed alpha
Helix 4
AA4
A
82 85Right-handed alpha
Helix 5
AA5
A
94 107Right-handed alpha
Helix 6
AA6
A
131 135Right-handed 310
Helix 7
AA7
A
139 154Right-handed alpha
Helix 8
AA8
A
168 172Right-handed 310
Helix 9
AA9
A
177 196Right-handed alpha
Helix 10
AB1
A
217 225Right-handed alpha
Helix 11
AB2
A
226 231Right-handed 310
Helix 12
AB3
A
252 268Right-handed alpha
Helix 13
AB4
A
292 309Right-handed alpha
Helix 14
AB5
A
330 335Right-handed 310
Helix 15
AB6
A
345 359Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5BXA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
378 383parallel
Strand 3
A
361 365anti-parallel
Strand 4
A
41 42anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
378 383parallel
Strand 3
A
389 394anti-parallel
Strand 4
A
437 441anti-parallel
Strand 5
A
408 413anti-parallel
Strand 6
A
418 423anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
159 162parallel
Strand 3
A
110 116parallel
Strand 4
A
75 81parallel
Strand 5
A
47 51parallel
Strand 6
A
315 318parallel
Strand 7
A
272 274parallel
Strand 8
A
234 237parallel
Strand 9
A
206 207parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
91 92anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 403first strand
Strand 2
A
428 432anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il