Analysis of interatomic Contacts of Structural Units in PDB entry:
5BXT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BXT entry

There are 2 chains in PDB entry 5BXT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 30	SER 662
B	HIS 28	VAL 661

There are 49 helices in PDB entry 5BXT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	83	99	Right-handed alpha
Helix 2	AA2	A	122	127	Right-handed alpha
Helix 3	AA3	A	146	162	Right-handed alpha
Helix 4	AA4	A	194	208	Right-handed alpha
Helix 5	AA5	A	226	230	Right-handed 310
Helix 6	AA6	A	236	250	Right-handed alpha
Helix 7	AA7	A	264	269	Right-handed alpha
Helix 8	AA8	A	271	273	Right-handed 310
Helix 9	AA9	A	292	308	Right-handed alpha
Helix 10	AB1	A	327	330	Right-handed 310
Helix 11	AB2	A	331	343	Right-handed alpha
Helix 12	AB3	A	347	366	Right-handed alpha
Helix 13	AB4	A	375	377	Right-handed 310
Helix 14	AB5	A	400	408	Right-handed alpha
Helix 15	AB6	A	415	417	Right-handed 310
Helix 16	AB7	A	430	437	Right-handed alpha
Helix 17	AB8	A	468	472	Right-handed 310
Helix 18	AB9	A	473	494	Right-handed alpha
Helix 19	AC1	A	501	513	Right-handed alpha
Helix 20	AC2	A	515	521	Right-handed alpha
Helix 21	AC3	A	533	537	Right-handed 310
Helix 22	AC4	A	598	600	Right-handed 310
Helix 23	AC5	A	601	607	Right-handed alpha
Helix 24	AC6	A	640	645	Right-handed 310
Helix 25	AC7	A	657	661	Right-handed 310
Helix 26	AC8	B	83	99	Right-handed alpha
Helix 27	AC9	B	122	127	Right-handed alpha
Helix 28	AD1	B	146	162	Right-handed alpha
Helix 29	AD2	B	194	208	Right-handed alpha
Helix 30	AD3	B	226	230	Right-handed 310
Helix 31	AD4	B	236	250	Right-handed alpha
Helix 32	AD5	B	264	269	Right-handed alpha
Helix 33	AD6	B	271	273	Right-handed 310
Helix 34	AD7	B	292	307	Right-handed alpha
Helix 35	AD8	B	327	330	Right-handed 310
Helix 36	AD9	B	331	343	Right-handed alpha
Helix 37	AE1	B	347	365	Right-handed alpha
Helix 38	AE2	B	400	408	Right-handed alpha
Helix 39	AE3	B	415	417	Right-handed 310
Helix 40	AE4	B	430	437	Right-handed alpha
Helix 41	AE5	B	468	472	Right-handed 310
Helix 42	AE6	B	473	494	Right-handed alpha
Helix 43	AE7	B	501	513	Right-handed alpha
Helix 44	AE8	B	515	521	Right-handed alpha
Helix 45	AE9	B	533	537	Right-handed 310
Helix 46	AF1	B	598	600	Right-handed 310
Helix 47	AF2	B	601	607	Right-handed alpha
Helix 48	AF3	B	640	646	Right-handed alpha
Helix 49	AF4	B	657	661	Right-handed 310

There are 18 sheets in PDB entry 5BXT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	B	529	532	anti-parallel
Strand 3	B	544	548	anti-parallel
Strand 4	B	554	558	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	63	70	anti-parallel
Strand 3	A	167	175	anti-parallel
Strand 4	A	131	136	anti-parallel
Strand 5	A	139	144	anti-parallel
Strand 6	A	114	118	parallel
Strand 7	A	76	79	parallel
Strand 8	A	103	105	parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	421	first strand
Strand 2	A	457	465	parallel
Strand 3	A	411	413	parallel
Strand 4	A	390	393	parallel
Strand 5	A	369	373	parallel
Strand 6	A	314	318	parallel
Strand 7	A	253	260	parallel
Strand 8	A	212	216	parallel
Strand 9	A	181	187	parallel
Strand 10	A	457	465	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	283	288	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	444	first strand
Strand 2	A	448	449	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	554	558	first strand
Strand 2	A	544	548	anti-parallel
Strand 3	A	529	532	anti-parallel
Strand 4	B	34	35	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	566	first strand
Strand 2	A	585	587	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	573	first strand
Strand 2	A	576	577	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	610	614	first strand
Strand 2	A	620	624	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	633	first strand
Strand 2	A	653	656	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	63	70	anti-parallel
Strand 3	B	167	175	anti-parallel
Strand 4	B	131	136	anti-parallel
Strand 5	B	139	144	anti-parallel
Strand 6	B	114	118	parallel
Strand 7	B	76	79	parallel
Strand 8	B	103	106	parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	421	first strand
Strand 2	B	457	465	parallel
Strand 3	B	411	413	parallel
Strand 4	B	390	393	parallel
Strand 5	B	369	373	parallel
Strand 6	B	314	318	parallel
Strand 7	B	253	260	parallel
Strand 8	B	212	216	parallel
Strand 9	B	181	187	parallel
Strand 10	B	457	465	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	283	288	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	444	first strand
Strand 2	B	448	449	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	566	first strand
Strand 2	B	585	587	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	573	first strand
Strand 2	B	576	577	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	610	614	first strand
Strand 2	B	620	624	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	633	first strand
Strand 2	B	653	656	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BXT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BXT