Analysis of interatomic Contacts of Structural Units in PDB entry:
5BY3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BY3 entry

There is 1 chain in PDB entry 5BY3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 19ASN 777
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5BY3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 56Right-handed alpha
Helix 2
AA2
A
76 82Right-handed alpha
Helix 3
AA3
A
112 127Right-handed alpha
Helix 4
AA4
A
169 172Right-handed 310
Helix 5
AA5
A
173 181Right-handed alpha
Helix 6
AA6
A
192 206Right-handed alpha
Helix 7
AA7
A
221 225Right-handed 310
Helix 8
AA8
A
227 236Right-handed alpha
Helix 9
AA9
A
250 259Right-handed alpha
Helix 10
AB1
A
264 284Right-handed alpha
Helix 11
AB2
A
307 330Right-handed alpha
Helix 12
AB3
A
333 337Right-handed 310
Helix 13
AB4
A
346 353Right-handed alpha
Helix 14
AB5
A
378 384Right-handed alpha
Helix 15
AB6
A
410 424Right-handed alpha
Helix 16
AB7
A
440 453Right-handed alpha
Helix 17
AB8
A
453 460Right-handed alpha
Helix 18
AB9
A
461 474Right-handed alpha
Helix 19
AC1
A
475 496Right-handed alpha
Helix 20
AC2
A
497 501Right-handed 310
Helix 21
AC3
A
510 515Right-handed 310
Helix 22
AC4
A
522 544Right-handed alpha
Helix 23
AC5
A
545 547Right-handed 310
Helix 24
AC6
A
548 550Right-handed 310
Helix 25
AC7
A
551 559Right-handed alpha
Helix 26
AC8
A
559 581Right-handed alpha
Helix 27
AC9
A
586 604Right-handed alpha
Helix 28
AD1
A
618 626Right-handed 310
Helix 29
AD2
A
729 739Right-handed alpha
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There are 6 sheets in PDB entry 5BY3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
145 148anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
28 31parallel
Strand 3
A
68 72parallel
Strand 4
A
106 110parallel
Strand 5
A
96 100anti-parallel
Strand 6
A
155 156anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
210 212parallel
Strand 3
A
162 166parallel
Strand 4
A
429 433parallel
Strand 5
A
388 393parallel
Strand 6
A
362 366parallel
Strand 7
A
339 341parallel
Strand 8
A
290 291parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 647first strand
Strand 2
A
766 772anti-parallel
Strand 3
A
670 672anti-parallel
Strand 4
A
658 659anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 647first strand
Strand 2
A
766 772anti-parallel
Strand 3
A
689 696anti-parallel
Strand 4
A
741 748anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
677 682first strand
Strand 2
A
755 761anti-parallel
Strand 3
A
708 713anti-parallel
Strand 4
A
719 722anti-parallel
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