Analysis of interatomic Contacts of Structural Units in PDB entry:
5BY7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BY7 entry

There are 4 chains in PDB entry 5BY7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR -15	GLY 321
B	THR -15	GLY 321
C	VAL -14	GLY 321
D	VAL -14	GLY 321

There are 53 helices in PDB entry 5BY7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	10	Right-handed alpha
Helix 2	AA2	A	12	23	Right-handed alpha
Helix 3	AA3	A	42	59	Right-handed alpha
Helix 4	AA4	A	61	65	Right-handed 310
Helix 5	AA5	A	81	91	Right-handed alpha
Helix 6	AA6	A	105	121	Right-handed alpha
Helix 7	AA7	A	134	138	Right-handed 310
Helix 8	AA8	A	148	152	Right-handed 310
Helix 9	AA9	A	153	158	Right-handed alpha
Helix 10	AB1	A	213	237	Right-handed alpha
Helix 11	AB2	A	239	243	Right-handed 310
Helix 12	AB3	A	252	264	Right-handed alpha
Helix 13	AB4	A	273	278	Right-handed alpha
Helix 14	AB5	A	282	296	Right-handed alpha
Helix 15	AB6	B	2	10	Right-handed alpha
Helix 16	AB7	B	12	19	Right-handed alpha
Helix 17	AB8	B	42	59	Right-handed alpha
Helix 18	AB9	B	61	65	Right-handed 310
Helix 19	AC1	B	81	91	Right-handed alpha
Helix 20	AC2	B	105	121	Right-handed alpha
Helix 21	AC3	B	134	138	Right-handed 310
Helix 22	AC4	B	153	153	Right-handed 310
Helix 23	AC5	B	154	158	Right-handed alpha
Helix 24	AC6	B	213	237	Right-handed alpha
Helix 25	AC7	B	239	243	Right-handed 310
Helix 26	AC8	B	252	264	Right-handed alpha
Helix 27	AC9	B	273	278	Right-handed alpha
Helix 28	AD1	B	280	282	Right-handed 310
Helix 29	AD2	B	283	296	Right-handed alpha
Helix 30	AD3	C	2	9	Right-handed alpha
Helix 31	AD4	C	42	59	Right-handed alpha
Helix 32	AD5	C	61	65	Right-handed 310
Helix 33	AD6	C	81	91	Right-handed alpha
Helix 34	AD7	C	105	121	Right-handed alpha
Helix 35	AD8	C	134	138	Right-handed 310
Helix 36	AD9	C	154	158	Right-handed alpha
Helix 37	AE1	C	213	237	Right-handed alpha
Helix 38	AE2	C	239	243	Right-handed 310
Helix 39	AE3	C	252	264	Right-handed alpha
Helix 40	AE4	C	273	278	Right-handed alpha
Helix 41	AE5	C	280	282	Right-handed 310
Helix 42	AE6	C	283	294	Right-handed alpha
Helix 43	AE7	D	2	9	Right-handed alpha
Helix 44	AE8	D	42	59	Right-handed alpha
Helix 45	AE9	D	61	65	Right-handed 310
Helix 46	AF1	D	81	91	Right-handed alpha
Helix 47	AF2	D	105	121	Right-handed alpha
Helix 48	AF3	D	134	138	Right-handed 310
Helix 49	AF4	D	213	237	Right-handed alpha
Helix 50	AF5	D	239	243	Right-handed 310
Helix 51	AF6	D	252	264	Right-handed alpha
Helix 52	AF7	D	273	278	Right-handed alpha
Helix 53	AF8	D	282	294	Right-handed alpha

There are 12 sheets in PDB entry 5BY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	101	first strand
Strand 2	A	67	72	parallel
Strand 3	A	125	132	parallel
Strand 4	A	161	169	anti-parallel
Strand 5	A	-14	-6	anti-parallel
Strand 6	A	176	185	anti-parallel
Strand 7	A	313	320	anti-parallel
Strand 8	A	301	308	anti-parallel
Strand 9	A	245	247	parallel
Strand 10	A	269	270	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	0	1	first strand
Strand 2	A	27	28	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	210	212	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	101	first strand
Strand 2	B	67	72	parallel
Strand 3	B	125	132	parallel
Strand 4	B	161	169	anti-parallel
Strand 5	B	-14	-6	anti-parallel
Strand 6	B	176	185	anti-parallel
Strand 7	B	313	320	anti-parallel
Strand 8	B	301	308	anti-parallel
Strand 9	B	245	247	parallel
Strand 10	B	269	270	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	0	1	first strand
Strand 2	B	27	28	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	210	212	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	101	first strand
Strand 2	C	68	72	parallel
Strand 3	C	125	132	parallel
Strand 4	C	161	168	anti-parallel
Strand 5	C	-13	-6	anti-parallel
Strand 6	C	176	185	anti-parallel
Strand 7	C	313	320	anti-parallel
Strand 8	C	301	308	anti-parallel
Strand 9	C	245	247	parallel
Strand 10	C	269	270	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	0	1	first strand
Strand 2	C	27	28	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	210	212	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	101	first strand
Strand 2	D	68	72	parallel
Strand 3	D	125	132	parallel
Strand 4	D	161	168	anti-parallel
Strand 5	D	-13	-6	anti-parallel
Strand 6	D	176	185	anti-parallel
Strand 7	D	313	320	anti-parallel
Strand 8	D	301	308	anti-parallel
Strand 9	D	245	247	parallel
Strand 10	D	269	270	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	0	1	first strand
Strand 2	D	27	28	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	196	first strand
Strand 2	D	210	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BY7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BY7