Analysis of interatomic Contacts of Structural Units in PDB entry:
5BY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BY9 entry

There are 4 chains in PDB entry 5BY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2THR 237
B
 ALA 4ASP 238
C
 GLU 3LEU 234
D
 GLU 3VAL 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 5BY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 21Right-handed alpha
Helix 2
AA2
A
22 36Right-handed alpha
Helix 3
AA3
A
41 75Right-handed alpha
Helix 4
AA4
A
80 112Right-handed alpha
Helix 5
AA5
A
112 117Right-handed alpha
Helix 6
AA6
A
119 139Right-handed alpha
Helix 7
AA7
A
143 164Right-handed alpha
Helix 8
AA8
A
171 188Right-handed alpha
Helix 9
AA9
A
191 209Right-handed alpha
Helix 10
AB1
A
209 214Right-handed alpha
Helix 11
AB2
A
218 235Right-handed alpha
Helix 12
AB3
B
6 20Right-handed alpha
Helix 13
AB4
B
22 35Right-handed alpha
Helix 14
AB5
B
41 75Right-handed alpha
Helix 15
AB6
B
80 112Right-handed alpha
Helix 16
AB7
B
119 139Right-handed alpha
Helix 17
AB8
B
143 165Right-handed alpha
Helix 18
AB9
B
171 188Right-handed alpha
Helix 19
AC1
B
191 209Right-handed alpha
Helix 20
AC2
B
209 214Right-handed alpha
Helix 21
AC3
B
215 217Right-handed 310
Helix 22
AC4
B
218 236Right-handed alpha
Helix 23
AC5
C
6 20Right-handed alpha
Helix 24
AC6
C
22 36Right-handed alpha
Helix 25
AC7
C
41 75Right-handed alpha
Helix 26
AC8
C
80 112Right-handed alpha
Helix 27
AC9
C
112 117Right-handed alpha
Helix 28
AD1
C
119 139Right-handed alpha
Helix 29
AD2
C
143 165Right-handed alpha
Helix 30
AD3
C
171 188Right-handed alpha
Helix 31
AD4
C
191 209Right-handed alpha
Helix 32
AD5
C
210 213Right-handed 310
Helix 33
AD6
C
215 217Right-handed 310
Helix 34
AD7
C
218 234Right-handed alpha
Helix 35
AD8
D
6 20Right-handed alpha
Helix 36
AD9
D
23 36Right-handed alpha
Helix 37
AE1
D
41 75Right-handed alpha
Helix 38
AE2
D
80 112Right-handed alpha
Helix 39
AE3
D
112 117Right-handed alpha
Helix 40
AE4
D
119 139Right-handed alpha
Helix 41
AE5
D
143 165Right-handed alpha
Helix 42
AE6
D
171 188Right-handed alpha
Helix 43
AE7
D
191 209Right-handed alpha
Helix 44
AE8
D
209 214Right-handed alpha
Helix 45
AE9
D
215 217Right-handed 310
Helix 46
AF1
D
218 236Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5BY9
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il