Analysis of interatomic Contacts of Structural Units in PDB entry:
5BYW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BYW entry

There are 5 chains in PDB entry 5BYW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 75THR 393
B
 VAL 76PRO 391
C
 VAL 76THR 393
D
 LYS 74THR 393
E
 ALA 75TYR 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 5BYW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 86Right-handed alpha
Helix 2
AA2
A
108 119Right-handed alpha
Helix 3
AA3
A
129 133Right-handed 310
Helix 4
AA4
A
142 159Right-handed alpha
Helix 5
AA5
A
171 176Right-handed alpha
Helix 6
AA6
A
176 195Right-handed alpha
Helix 7
AA7
A
215 234Right-handed alpha
Helix 8
AA8
A
243 248Right-handed alpha
Helix 9
AA9
A
248 253Right-handed alpha
Helix 10
AB1
A
272 277Right-handed alpha
Helix 11
AB2
A
285 290Right-handed 310
Helix 12
AB3
A
296 318Right-handed alpha
Helix 13
AB4
A
333 351Right-handed alpha
Helix 14
AB5
A
365 369Right-handed 310
Helix 15
AB6
A
381 390Right-handed alpha
Helix 16
AB7
B
77 86Right-handed alpha
Helix 17
AB8
B
109 119Right-handed alpha
Helix 18
AB9
B
129 133Right-handed 310
Helix 19
AC1
B
142 159Right-handed alpha
Helix 20
AC2
B
171 176Right-handed alpha
Helix 21
AC3
B
176 195Right-handed alpha
Helix 22
AC4
B
215 234Right-handed alpha
Helix 23
AC5
B
243 248Right-handed alpha
Helix 24
AC6
B
248 253Right-handed alpha
Helix 25
AC7
B
272 277Right-handed alpha
Helix 26
AC8
B
285 290Right-handed 310
Helix 27
AC9
B
296 318Right-handed alpha
Helix 28
AD1
B
333 351Right-handed alpha
Helix 29
AD2
B
365 369Right-handed 310
Helix 30
AD3
B
381 390Right-handed alpha
Helix 31
AD4
C
77 86Right-handed alpha
Helix 32
AD5
C
108 118Right-handed alpha
Helix 33
AD6
C
129 133Right-handed 310
Helix 34
AD7
C
142 159Right-handed alpha
Helix 35
AD8
C
171 176Right-handed alpha
Helix 36
AD9
C
176 195Right-handed alpha
Helix 37
AE1
C
215 234Right-handed alpha
Helix 38
AE2
C
243 248Right-handed alpha
Helix 39
AE3
C
248 254Right-handed alpha
Helix 40
AE4
C
272 277Right-handed alpha
Helix 41
AE5
C
285 290Right-handed 310
Helix 42
AE6
C
296 317Right-handed alpha
Helix 43
AE7
C
333 351Right-handed alpha
Helix 44
AE8
C
365 369Right-handed 310
Helix 45
AE9
C
381 390Right-handed alpha
Helix 46
AF1
D
77 86Right-handed alpha
Helix 47
AF2
D
108 119Right-handed alpha
Helix 48
AF3
D
142 159Right-handed alpha
Helix 49
AF4
D
171 176Right-handed alpha
Helix 50
AF5
D
176 195Right-handed alpha
Helix 51
AF6
D
215 232Right-handed alpha
Helix 52
AF7
D
243 248Right-handed alpha
Helix 53
AF8
D
248 253Right-handed alpha
Helix 54
AF9
D
272 277Right-handed alpha
Helix 55
AG1
D
285 290Right-handed 310
Helix 56
AG2
D
296 317Right-handed alpha
Helix 57
AG3
D
333 351Right-handed alpha
Helix 58
AG4
D
365 369Right-handed 310
Helix 59
AG5
D
381 390Right-handed alpha
Helix 60
AG6
E
77 86Right-handed alpha
Helix 61
AG7
E
108 118Right-handed alpha
Helix 62
AG8
E
129 133Right-handed 310
Helix 63
AG9
E
142 159Right-handed alpha
Helix 64
AH1
E
171 176Right-handed alpha
Helix 65
AH2
E
176 195Right-handed alpha
Helix 66
AH3
E
215 234Right-handed alpha
Helix 67
AH4
E
243 248Right-handed alpha
Helix 68
AH5
E
248 253Right-handed alpha
Helix 69
AH6
E
272 277Right-handed alpha
Helix 70
AH7
E
285 290Right-handed 310
Helix 71
AH8
E
296 317Right-handed alpha
Helix 72
AH9
E
333 350Right-handed alpha
Helix 73
AI1
E
365 369Right-handed 310
Helix 74
AI2
E
381 390Right-handed alpha
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There are 10 sheets in PDB entry 5BYW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
122 125parallel
Strand 3
A
162 165parallel
Strand 4
A
202 205parallel
Strand 5
A
239 241parallel
Strand 6
A
263 269parallel
Strand 7
A
321 326parallel
Strand 8
A
354 357parallel
Strand 9
A
87 90parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
379 380anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
122 125parallel
Strand 3
B
162 165parallel
Strand 4
B
202 205parallel
Strand 5
B
239 241parallel
Strand 6
B
263 268parallel
Strand 7
B
321 325parallel
Strand 8
B
354 357parallel
Strand 9
B
87 90parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 374first strand
Strand 2
B
379 380anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
87 90first strand
Strand 2
C
122 125parallel
Strand 3
C
162 165parallel
Strand 4
C
202 205parallel
Strand 5
C
239 241parallel
Strand 6
C
263 267parallel
Strand 7
C
321 323parallel
Strand 8
C
354 357parallel
Strand 9
C
87 90parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
373 374first strand
Strand 2
C
379 380anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
87 90first strand
Strand 2
D
122 125parallel
Strand 3
D
162 165parallel
Strand 4
D
202 205parallel
Strand 5
D
239 241parallel
Strand 6
D
263 267parallel
Strand 7
D
321 323parallel
Strand 8
D
354 357parallel
Strand 9
D
87 90parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
373 374first strand
Strand 2
D
379 380anti-parallel
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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
87 90first strand
Strand 2
E
122 125parallel
Strand 3
E
162 165parallel
Strand 4
E
202 205parallel
Strand 5
E
239 241parallel
Strand 6
E
263 268parallel
Strand 7
E
321 325parallel
Strand 8
E
354 357parallel
Strand 9
E
87 90parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
373 374first strand
Strand 2
E
379 380anti-parallel
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