Analysis of interatomic Contacts of Structural Units in PDB entry:
5BZZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BZZ entry

There are 4 chains in PDB entry 5BZZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 14	VAL 351
B	ARG 14	VAL 351
C	ARG 14	VAL 351
D	ARG 14	VAL 351

There are 40 helices in PDB entry 5BZZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	62	Right-handed alpha
Helix 2	AA2	A	77	81	Right-handed 310
Helix 3	AA3	A	97	99	Right-handed 310
Helix 4	AA4	A	100	113	Right-handed alpha
Helix 5	AA5	A	128	142	Right-handed alpha
Helix 6	AA6	A	147	160	Right-handed alpha
Helix 7	AA7	A	168	184	Right-handed alpha
Helix 8	AA8	A	278	280	Right-handed 310
Helix 9	AA9	A	323	325	Right-handed 310
Helix 10	AB1	A	327	331	Right-handed 310
Helix 11	AB2	B	50	62	Right-handed alpha
Helix 12	AB3	B	77	81	Right-handed 310
Helix 13	AB4	B	97	99	Right-handed 310
Helix 14	AB5	B	100	113	Right-handed alpha
Helix 15	AB6	B	128	142	Right-handed alpha
Helix 16	AB7	B	147	160	Right-handed alpha
Helix 17	AB8	B	168	184	Right-handed alpha
Helix 18	AB9	B	278	280	Right-handed 310
Helix 19	AC1	B	323	325	Right-handed 310
Helix 20	AC2	B	327	331	Right-handed 310
Helix 21	AC3	C	50	62	Right-handed alpha
Helix 22	AC4	C	77	81	Right-handed 310
Helix 23	AC5	C	97	99	Right-handed 310
Helix 24	AC6	C	100	113	Right-handed alpha
Helix 25	AC7	C	128	142	Right-handed alpha
Helix 26	AC8	C	147	160	Right-handed alpha
Helix 27	AC9	C	168	184	Right-handed alpha
Helix 28	AD1	C	278	280	Right-handed 310
Helix 29	AD2	C	323	325	Right-handed 310
Helix 30	AD3	C	327	331	Right-handed 310
Helix 31	AD4	D	49	62	Right-handed alpha
Helix 32	AD5	D	77	81	Right-handed 310
Helix 33	AD6	D	97	99	Right-handed 310
Helix 34	AD7	D	100	113	Right-handed alpha
Helix 35	AD8	D	128	142	Right-handed alpha
Helix 36	AD9	D	147	160	Right-handed alpha
Helix 37	AE1	D	168	185	Right-handed alpha
Helix 38	AE2	D	278	280	Right-handed 310
Helix 39	AE3	D	323	325	Right-handed 310
Helix 40	AE4	D	327	331	Right-handed 310

There are 14 sheets in PDB entry 5BZZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	29	first strand
Strand 2	A	32	35	anti-parallel
Strand 3	A	119	123	parallel
Strand 4	A	65	71	parallel
Strand 5	A	85	90	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	235	first strand
Strand 2	A	238	250	anti-parallel
Strand 3	A	192	200	anti-parallel
Strand 4	A	342	349	anti-parallel
Strand 5	A	316	321	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	226	first strand
Strand 2	A	213	219	anti-parallel
Strand 3	A	252	259	anti-parallel
Strand 4	A	268	276	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	32	35	anti-parallel
Strand 3	B	119	123	parallel
Strand 4	B	65	71	parallel
Strand 5	B	85	90	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	39	first strand
Strand 2	B	48	49	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	235	first strand
Strand 2	B	238	250	anti-parallel
Strand 3	B	192	200	anti-parallel
Strand 4	B	342	349	anti-parallel
Strand 5	B	316	321	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	226	first strand
Strand 2	B	213	219	anti-parallel
Strand 3	B	252	259	anti-parallel
Strand 4	B	268	276	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	29	first strand
Strand 2	C	32	35	anti-parallel
Strand 3	C	119	123	parallel
Strand 4	C	65	71	parallel
Strand 5	C	85	90	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	48	49	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	235	first strand
Strand 2	C	238	250	anti-parallel
Strand 3	C	192	200	anti-parallel
Strand 4	C	342	349	anti-parallel
Strand 5	C	316	321	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	226	first strand
Strand 2	C	213	219	anti-parallel
Strand 3	C	252	259	anti-parallel
Strand 4	C	268	276	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	29	first strand
Strand 2	D	32	35	anti-parallel
Strand 3	D	119	123	parallel
Strand 4	D	65	71	parallel
Strand 5	D	85	90	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	235	first strand
Strand 2	D	238	250	anti-parallel
Strand 3	D	192	200	anti-parallel
Strand 4	D	342	349	anti-parallel
Strand 5	D	316	321	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	226	first strand
Strand 2	D	213	219	anti-parallel
Strand 3	D	252	259	anti-parallel
Strand 4	D	268	276	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BZZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BZZ